BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333812
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04950.1 | Symbols: TAFII59, TAF6, ATTAF6 | TATA BOX ASSOCIA... 2606 0.0
> AT1G04950.1 | Symbols: TAFII59, TAF6, ATTAF6 | TATA BOX ASSOCIATED
FACTOR II 59 | chr1:1403085-1407468 REVERSE LENGTH=2192
Length=2192
Score = 2606 bits (1411), Expect = 0.0
Identities = 1591/1673 (95%), Gaps = 31/1673 (2%)
Strand=Plus/Plus
Query 1 ATGAGCATTGTACCTAAGGAAACGGTGGAGGTAATAGCTCAAAGTATTGGGATTACCAAC 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 177 ATGAGCATTGTACCTAAGGAAACGGTTGAGGTAATAGCTCAAAGTATTGGGATTACCAAC 236
Query 61 TTGTTACCTGAAGCTGCTCTTATGCTTGCTCCTGATGTCGAGTATCGTGTCCGAGAGATC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 237 TTGTTACCTGAAGCTGCTCTTATGCTTGCTCCTGATGTTGAGTATCGTGTCCGAGAGATC 296
Query 121 ATGCAGGAAGCTATCAAATGCATGCGTCATTCAAAGAGAACGACTTTAACAGCTTCGGAT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 297 ATGCAGGAAGCTATCAAATGCATGCGTCACTCAAAGAGAACGACTTTAACAGCTTCGGAT 356
Query 181 GTAGATGGTGCTCTCAACTTGAGGAACGTTGAGCCGATATATGGCTTTGCCTCAGGAGGA 240
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 357 GTAGATGGTGCTCTCAACTTAAGGAACGTTGAGCCGATATATGGATTTGCCTCAGGAGGG 416
Query 241 CCATTTCGTTTTAGAAAAGCTATTGGGCATCGCGATTTGTTCTACACTGATGACAGAGAA 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 417 CCATTTCGTTTTAGAAAAGCTATTGGACATCGCGATTTGTTCTACACTGATGACAGAGAA 476
Query 301 GTGGATTTCAAAGATGTGATCGAAGCCCCGCTACCAAAAGCTCCCCTTGATACTGAAATT 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 GTGGATTTCAAAGATGTGATCGAAGCCCCGCTGCCAAAAGCTCCCCTTGATACTGAAATT 536
Query 361 GTTTGTCACTGGCTGGCTATTGAAGGAGTGCAACCAGCTATACCAGAAAATGCTCCTTTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTTTGTCACTGGCTGGCTATTGAAGGAGTGCAACCAGCTATACCAGAAAATGCTCCTTTA 596
Query 421 GAAGTCATTAGAGCACCTGCAGAAAACAAAATCCATGAACAAAAAGACGGACCTCCTATT 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 597 GAAGTCATTAGAGCACCTGCAGAAACCAAAATCCATGAACAAAAAGACGGACCTCTTATT 656
Query 481 GACGTTAGGCTACCAGTAAAGCATGTACTATCTAGGGAACTTCAGTTATACTTCCAAAAG 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GACGTTAGGCTACCAGTGAAGCATGTACTATCTAGGGAACTTCAGTTATACTTCCAAAAG 716
Query 541 ATTGCTGAACTTGCAATGAGCAAGTCAAATCCTGCTCTGTTTAAAGAAGCATTAGTGAGC 600
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 717 ATTGCTGAACTTGCAATGAGCAAGTCAAATCCTCCTCTGTATAAAGAAGCATTAGTGAGC 776
Query 601 TTGGCCTCAGACTCCGGACTTCATCCTCTAGTTCCATATTTTACAAATTTCATTGCTGAT 660
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 777 TTGGCCTCAGACTCAGGACTTCATCCTCTAGTTCCATATTTTACAAATTTCATTGC---T 833
Query 661 GAGGTAACATTATGCACCACCAAGGTTTCAAATGGTTTAAAAGACTTTCGACTCCTGTTT 720
| ||| ||||||||||||| ||||| ||||| ||||||||||||
Sbjct 834 ---G-------ATG--------AGGTTTCAAATGGCTTAAATGACTTCCGACTCCTGTTT 875
Query 721 AATCTAATGCACATTGTTAGAAGTCTTCTACAGAATCCTCACATAAACATAGAACCTTAT 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 876 AATCTAATGCACATTGTTAGAAGTCTTCTACAGAATCCTCACATACACATAGAACCTTAT 935
Query 781 CTGTACCAGTTGATGCCATCTGTTGTAACGTGCCTTGTATCAAGAAAGCTTGGAAATAGA 840
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 936 CTGCACCAGTTGATGCCATCTGTTGTAACATGCCTTGTATCAAGAAAGCTTGGAAATAGA 995
Query 841 TTTGCTGACAACCATTGGGAACTCAGAGATTTTGCGTCAAATCTGGTTGCACTGATATGT 900
|||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 996 TTTGCTGACAACCACTGGGAACTCAGAGATTTTGCGGCAAATCTGGTTTCACTGATATGT 1055
Query 901 AAAAGGTACGGACCCGTTTATATTACTCTTCAGTCTCGTCTTACAAGAACTTTAGTCAAT 960
|||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1056 AAAAGGTATGGAACCGTTTATATAACTCTTCAGTCTCGTCTTACCAGAACTTTAGTCAAT 1115
Query 961 GCACTGTTGGACCCAAAGAAAGCTTTGACTCAGCACTATGGTGCAATT-AGAGGATTAGC 1019
|||||| ||||||||||||| ||||||||||||||||||||||| ||| | |||||||||
Sbjct 1116 GCACTGCTGGACCCAAAGAAGGCTTTGACTCAGCACTATGGTGCGATTCA-AGGATTAGC 1174
Query 1020 AGCTTTGGGGCACAATATTGTACGCCTT-TTAATTCTATCAAATCTCGAACCGTATCTAA 1078
|||||||||||||| | ||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1175 AGCTTTGGGGCACACTGTTGTACGCCTTCTT-ATTCTATCAAATCTCGAACCATATCTAA 1233
Query 1079 GTCTTCTCCAACCTGAATTGGATGCTGAGAAGCaaaaaaaTCAGATGAAGAACTACGAAG 1138
|||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1234 GTCTTCTCGAACCTGAATTGAATGCTGAGAAGCAAAAAAATCAGATGAAGATCTACGAAG 1293
Query 1139 CTTGGTGTGTATATGGAGCCTTGCTGCGAGCTGCAGGCTTGTGTATACATGACCGGCTTA 1198
||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1294 CTTGGCGTGTATATGGAGCCTTGCTGCGTGCTGCAGGCTTGTGTATACATGGCCGGCTTA 1353
Query 1199 AAATCTTCCCACCTTTACCATCTCCATCACCAAGTTTCCTCCAT------AAGGGAAAGG 1252
||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 1354 AAATCTTCCCACCTTTACCATCTCCGTCACCAAGTTTTCTCCATAAGGGAAAGGGAAAGG 1413
Query 1253 GAAAGATAATCAATACTGATCCCCACAAGCGGAAGCTGAGCATAGATTCTTCAGAAAACC 1312
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1414 GAAAGATAATCAGTACTGATCCCCACAAGCGGAAGCTGAGTGTAGATTCTTCAGAAAACC 1473
Query 1313 AATCGCCACAGAAAAGATTGATAACCATGGATGGGCCAGATGGTGTGCAATCACAAGATC 1372
|||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1474 AATCACCGCAGAAAAGATTGATAACCATGGATGGGCCAGATGGTGTACATTCACAAGATC 1533
Query 1373 AATCCGGCTCAGCTCCAATGCAAGTAGATAATCCAGTGGAAAATGACAATCCGCCACAAA 1432
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 AATCTGGCTCAGCTCCAATGCAAGTAGATAATCCAGTGGAAAATGACAATCCGCCACAAA 1593
Query 1433 ACTCTGTTCAGCCATCCTCATCAGAACAAGCTTCTGATGCTAACGAATCTGAAAGCAGAA 1492
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1594 ACTCTGTTCAGCCATCCTCATCAGAACAAGCCTCTGATGCTAACGAATCTGAAAGCAGAA 1653
Query 1493 ATGGAAAGGTGAAAGAAAGCGGTAGGAGTCGGGCTATTACCATGAAAGCAATCCTTGATC 1552
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1654 ATGGAAAGGTGAAAGAAAGCGGCAGGAGTCGGGCTATTACCATGAAAGCAATCCTTGATC 1713
Query 1553 AGATATGGAAAGATGATCTTGATTCCGGACGGCTATTGGTGAAACTGCACGAACTCTATG 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1714 AGATATGGAAAGATGATCTTGATTCCGGACGGCTATTGGTGAAACTGCACGAACTCTATG 1773
Query 1613 GTGATAGGATTCTTCCCTTTATCCCTTCTACAGAGATGTCAGTATTCCTCTAA 1665
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 GTGATAGGATTCTTCCCTTTATCCCTTCTACAGAGATGTCAGTATTCCTCTAA 1826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82278693255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5