BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333823
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05040.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 723 0.0
> AT1G05040.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1);
Has 14 Blast hits to 12 proteins in 3 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1447369-1448448
REVERSE LENGTH=814
Length=814
Score = 723 bits (391), Expect = 0.0
Identities = 461/496 (93%), Gaps = 0/496 (0%)
Strand=Plus/Plus
Query 3 GGAGGAAGATAATAATGTCACTAGGTTCTGCAAGGCAACGTCTGCATGTAAAGATGCAGC 62
||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 6 GGAAGAAGATACTAACGTCACTAGGTTCTGCAAGGCAACGTCTGCGTGTAAAGATGCAGC 65
Query 63 ATTTTACTACCTTGAAGGCTTCGACTGGAATCTTGAAGACGCCATTTCTGGTTTCCTTGG 122
||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 66 ATTCTACTACCTTGAAGGATTCGACTGGAATCTCGAAGACGCCATCTCTGGTTTCCTCGG 125
Query 123 GGATCAACTTCCTCCGCTCAAAATGAGAGCGACACCACGGAGGGTGAATGAATGGCGATA 182
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 126 TGATCAACTTCCTCCGCTCAAAATAAGAGCGACTCCACGGAGGGTGAATGAATGGCGAGA 185
Query 183 TCGATCTCGATCTCCTTTGAGAAGAAGATACTCTGCTACCTCTGTCTCGGAACTTAAGTT 242
||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| | |
Sbjct 186 GCGATCTCGATCTCCTTTAAGAAGAAGATACTCTACTACCTCTGTCTCGGAATTTACGCT 245
Query 243 TAAGATGCACCAAGATGAGATAACCATAACGAGGAGCTCTGATACCGCTGCTTTGGCCAC 302
||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 246 GAAGATGCGCCAAGATGAGATAACCATAACGAAAAGCTCTGATACGGGTGCTTTGGCCAC 305
Query 303 CAGTTTGGATGATAGTAGAAGAGAGCTTCATGATTCTGATGATATATCTCATGGAGAAAA 362
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CAGTTTGGATGATAGTGGAAGAGAGCTTCATGATTCTGATGATATATCTCATGGAGAAAA 365
Query 363 AATTGTGTCTATAGCTAATCCTGTGAATCAGGAGTTTAAAGAAGAGGGATCATCTGTCCA 422
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||
Sbjct 366 AATTGTGTCTATAGCTAATCCGGTGAATCAAGAGTTTAAAGAAGAGGGATCATCAGTTCA 425
Query 423 AGCTACAAATATTTGTGAATCCACCTCCATTGAGATTGACTTGCCTAGCCCGGATCCTGA 482
|||||| || ||||||||||||||||||||||||||| |||||||||| ||||||||| |
Sbjct 426 AGCTACGAAGATTTGTGAATCCACCTCCATTGAGATTCACTTGCCTAGACCGGATCCTTA 485
Query 483 TTCGGACTCTGACTAA 498
||||||||||||||||
Sbjct 486 TTCGGACTCTGACTAA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23760751531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5