BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333866
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05470.1 | Symbols: CVP2 | DNAse I-like superfamily protein ... 1478 0.0
AT2G32010.1 | Symbols: CVL1 | CVP2 like 1 | chr2:13624792-13629... 918 0.0
> AT1G05470.1 | Symbols: CVP2 | DNAse I-like superfamily protein
| chr1:1607357-1611703 REVERSE LENGTH=2696
Length=2696
Score = 1478 bits (800), Expect = 0.0
Identities = 874/911 (96%), Gaps = 0/911 (0%)
Strand=Plus/Plus
Query 743 ATGATGATAATGGTCTCGGGGATTCTCCAAGCACCGTCTTGTACTCACCAGGTTCTGCAG 802
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1356 ATGATGATAATGGTCTTGGGGATTCTCCAAGCACTGTCTTGTACTCACCAGGTTCTGCAG 1415
Query 803 CAAACGACAATGGATATAGAATCCCGTGGAACTCTTCACAGTATTGTTTAGTTGCTAGCA 862
||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1416 CAAACGAGAATGGATATAGGATCCCATGGAACTCTTCGCAGTATTGTTTAGTTGCTAGCA 1475
Query 863 AACAAATGGTGGGTGTCTTCCTAACTATTTGGGTGAAAAGCGAGCTAAGAGAACACGTTA 922
|||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| |
Sbjct 1476 AACAAATGGTGGGTGTCTTCTTAACCATTTGGGTGAAAAGTGAGCTAAGAGAACACGTCA 1535
Query 923 AGAACATGAAAGTATCTTGTGTTGGCAGAGGACTGATGGGTTATCTTGGAAATAAGGGAT 982
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1536 AGAACATGAAAGTATCTTGTGTTGGCAGGGGACTGATGGGTTATCTTGGAAATAAGGGAT 1595
Query 983 CGATCTCAATAAGCATGTTGCTCCATCAAACAAGCTTTTGCTTCGTCTGTACCCACTTGA 1042
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1596 CAATCTCAATAAGCATGTTGCTCCATCAAACAAGCTTTTGCTTCGTTTGTACGCACTTGA 1655
Query 1043 CTTCGGGACAAAAAGAAGGTGATGAGCTAAAGAGAAACTCTGATGTCATGGAGATACTCA 1102
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1656 CTTCGGGACAAAAAGAAGGCGATGAGCTAAAGAGAAACTCTGATGTCATGGAGATACTGA 1715
Query 1103 AGAAAACGAGATTTCCTCGCGTTAAGAGTTCAGAGGAAGAAAAGTCCCCTGAGAATATCC 1162
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1716 AGAAAACGAGGTTTCCGCGCGTTAAGAGTTCAGAGGAAGAAAAGTCCCCTGAGAACATCC 1775
Query 1163 TTCAGCATGACCGGGTAATATGGCTTGGCGATCTAAACTACCGTATAGCACTGTCTTACC 1222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1776 TTCAGCATGACCGGGTAATATGGCTTGGCGATCTAAACTACCGTATAGCACTGTCTTATC 1835
Query 1223 GATCTGCCAAAGCACTCGTTGAGATGCAGAATTGGAGAGCTTTACTAGAAAACGACCAGT 1282
||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1836 GATCTGCCAAAGCGCTTGTTGAGATGCAGAATTGGAGAGCTTTACTTGAAAATGACCAGT 1895
Query 1283 TAAGAATTGAGCAAAAAAGAGGCCATGTTTTTAAGGGATGGAATGAAGGAAAGATTTATT 1342
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1896 TAAGAATTGAGCAAAAACGAGGCCATGTGTTTAAGGGATGGAATGAAGGAAAGATTTATT 1955
Query 1343 TCCCACCAACCTACAAGTACTCGAGGAACTCAGATAGATATTCTGGAGACGATCTGCATC 1402
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 1956 TCCCACCAACGTACAAGTACTCGAGGAACTCAGATAGATACTCTGGAGATGATTTGCATC 2015
Query 1403 CCAAGGAGAAACGTCGCACTCCTGCTTGGTGTGATAGGATATTGTGGTTTGGTGAAGGAC 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2016 CCAAGGAGAAACGTCGCACTCCTGCTTGGTGTGATAGGATATTGTGGTTTGGTGAAGGAC 2075
Query 1463 TGCATCAGTTATCATACGTAAGAGGAGAGTCACGGTTCTCGGATCATAGACCGGTCTATG 1522
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 2076 TGCATCAGTTATCTTATGTAAGAGGAGAGTCACGGTTCTCTGATCATAGACCGGTCTACG 2135
Query 1523 GCATTTTCTGTGCAGAGGTTGAGTCAGCTCATAATAGGTTAAAGCGAACAACGAGTTACT 1582
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2136 GCATTTTCTGTGCAGAGGTTGAGTCAGCTCATAATAGGATAAAGCGAACAACGAGTTACT 2195
Query 1583 CCACTTCACGGGTCCAAGCTGAAGAACTCTTACCTTACTCCCGTGGATACACCGAGCTCA 1642
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2196 CCGCTTCACGGGTCCAAGCTGAAGAGCTCTTACCTTACTCCCGTGGATACACCGAGCTCA 2255
Query 1643 GCTTCTTCTAG 1653
|||||||||||
Sbjct 2256 GCTTCTTCTAG 2266
Score = 1275 bits (690), Expect = 0.0
Identities = 726/744 (98%), Gaps = 0/744 (0%)
Strand=Plus/Plus
Query 4 AAGCTGGCATGGTCCAAGAAGATGGTTAGGAAATGGTTCAATATCAAAAGCAAAACAGAG 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 440 AAGCTGGCATGGTCCAAGAAGATGGTAAGGAAATGGTTCAATATCAAAAGCAAAACAGAG 499
Query 64 GAGTTTCAAGCAGATGATCCTACTTCTGCTCGAGTTGAAGTAGAGCATAGAAGTAGCTTC 123
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 500 GAGTTTCAAGCAGATGATCCTTCTTCTGCTGGAATTGAAGTAGAGCATAGAAGTAGCTTT 559
Query 124 TCAGCTGAGAAAGCACCTTCCACAATCAAGAATACCAAAACTGAGAAACTCAGTAAGAAC 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TCAGCTGAGAAAGCACCTTCCACAATCAAGAATACCAAAACTGAGAAACTCAGTAAGAAC 619
Query 184 TGGGAGCAGCAAGCTCGGCAAAGGAGAATGAATTATGAGAATCCTAGGATCATTGATGTC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TGGGAGCAGCAAGCTCGGCAAAGGAGAATGAATTATGAGAATCCTAGGATCATTGATGTC 679
Query 244 CAAAACTACAGCATCTTTGTAGCTACATGGAACGTAGCTGGACGCTCTCCTCCTTCAGAC 303
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 680 CAAAACTACAGCATCTTTGTGGCTACATGGAACGTAGCTGGACGCTCTCCTCCTTCAGAC 739
Query 304 TTAAACCTTGATGAGTGGCTTCATTCATCAGCTCCTGCAGATATATATGTACTCGGATTC 363
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 740 TTAAACCTTGATGAGTGGCTTCATTCATCAGCTCCTGCTGATATCTATGTACTCGGATTC 799
Query 364 CAAGAGATTGTTCCTCTTAATGCTGGAAATGTCCTTGGAGCTGAAGACAATGGACCTGCT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CAAGAGATTGTTCCTCTTAATGCTGGAAATGTCCTTGGAGCTGAAGACAATGGACCTGCT 859
Query 424 CAGAAATGGCTCTCTCTTATCCGTAAAACGCTCAATAACCGACCAGGAACTAGTGGAACC 483
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 860 CAGAAATGGCTCTCTCTTATCCGAAAAACGCTTAATAACCGACCAGGAACTAGCGGAACC 919
Query 484 AGCGGTTATCACACGCCTTCCCCTATCCCTGTGCCTATGGCAGAGCTTGATGCTGATTTC 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 AGCGGTTATCACACGCCTTCCCCTATCCCTGTGCCTATGGCAGAGCTTGATGCTGATTTC 979
Query 544 TCTGGATCCACAAGGCAAAAGAACTCTACTTTCTTCCACAGACGGTCTTTTCAGACCCCG 603
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TCTGGATCTACAAGGCAAAAGAACTCTACTTTCTTCCACAGACGGTCTTTTCAGACCCCG 1039
Query 604 AGTAGTACATGGAATGATCCTTCCATTCCTCAGCCAGGTCTTGACCGTCGTTTCAGCGTC 663
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1040 AGTAGTACATGGAATGATCCTTCTATTCCTCAGCCAGGTCTTGACCGTCGTTTCAGCGTC 1099
Query 664 TGTGACCGTGTATTCTTCAGCCACAGGCCAAGTGATTTCGACCCAAGTTTCCGTGGTAGT 723
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1100 TGTGACCGTGTCTTCTTCAGCCACAGGCCAAGTGATTTCGACCCGAGTTTCCGTGGTAGC 1159
Query 724 AGCAGCAGTCACAGGCCTAATGAT 747
||||||||||| ||||||| ||||
Sbjct 1160 AGCAGCAGTCATAGGCCTAGTGAT 1183
> AT2G32010.1 | Symbols: CVL1 | CVP2 like 1 | chr2:13624792-13629146
FORWARD LENGTH=2745
Length=2745
Score = 918 bits (497), Expect = 0.0
Identities = 732/849 (86%), Gaps = 2/849 (0%)
Strand=Plus/Plus
Query 793 GGTTCTGCAGCAAACGACAATGGATATAGAATCCCGTGGAACTCTTCACAGTATTGTTTA 852
||||||||||||||||| || || || |||| |||||||||||| || ||||| |||||
Sbjct 1477 GGTTCTGCAGCAAACGAAAACGGTTACAGAACCCCGTGGAACTCATCGCAGTACTGTTTG 1536
Query 853 GTTGCTAGCAAACAAATGGTGGGTGTCTTCCTAACTATTTGGGTGAAAAGCGAGCTAAGA 912
|| || || ||||| ||||| ||| |||| |||| |||||||||||||||||| || ||
Sbjct 1537 GTCGCAAGTAAACAGATGGTTGGTATCTTTTTAACCATTTGGGTGAAAAGCGAGTTACGA 1596
Query 913 GAACACGTTAAGAACATGAAAGTATCTTGTGTTGGCAGAGGACTGATGGGTTATCTTGGA 972
|||||||| |||||||||||||||||||||||||| |||||| | ||||||||||| |||
Sbjct 1597 GAACACGTCAAGAACATGAAAGTATCTTGTGTTGGTAGAGGATTAATGGGTTATCTCGGA 1656
Query 973 AATAAGGGATCGATCTCAATAAGCATGTTGCTCCATCAAACAAGCTTTTGCTTCGTCTGT 1032
||||||||||| |||||||| || |||||||| |||||||||||||| ||||| || ||
Sbjct 1657 AATAAGGGATCAATCTCAATTAGTATGTTGCTTCATCAAACAAGCTTCTGCTTTGTGTGC 1716
Query 1033 ACCCACTTGACTTCGGGACAAAAAGAAGGTGATGAGCTAAAGAGAAACTCTGATGTCATG 1092
||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1717 ACCCATTTGACCTCGGGACAAAAAGAAGGTGATGAGCTAAGGAGAAACTCCGATGTCATG 1776
Query 1093 GAGATACTCAAGAAAACGAGATTTCCTCGCGTTAAGAGTTCAGAGGAAGAAAAGTCCCCT 1152
||||||||||||||||| || |||||||| || ||||||| | ||| || |||||||||
Sbjct 1777 GAGATACTCAAGAAAACAAGGTTTCCTCGAGTCCAGAGTTCTGCGGACGAGAAGTCCCCT 1836
Query 1153 GAGAATATCCTTCAGCATGACCGGGTAATATGGCTTGGCGATCTAAACTACCGTATAGCA 1212
|||||||||||||||||||| |||||||||||||| || ||||| |||||||| ||||||
Sbjct 1837 GAGAATATCCTTCAGCATGATCGGGTAATATGGCTCGGGGATCTGAACTACCGAATAGCA 1896
Query 1213 CTGTCTTACCGATCTGCCAAAGCACTCGTTGAGATGCAGAATTGGAGAGCTTTACTAGAA 1272
|| ||||||||||| || |||||||| || |||||||| || ||||| || ||||||||
Sbjct 1897 CTCTCTTACCGATCCGCAAAAGCACTTGTCGAGATGCAAAACTGGAGGGCATTACTAGAG 1956
Query 1273 AACGACCAGTTAAGAATTGAGCAAAAAAGAGGCCATGTTTTTAAGGGATGGAATGAAGGA 1332
||||| |||||| | || ||||| ||| |||| ||||| ||||| |||||||| ||||||
Sbjct 1957 AACGATCAGTTACGGATAGAGCAGAAACGAGGACATGTGTTTAAAGGATGGAACGAAGGA 2016
Query 1333 AAGATTTATTTCCCACCAACCTACAAGTACTCGAGGAACTCAGATAGATATTCTGGAGAC 1392
||||| || ||||||||||| ||||| ||||| | ||||| ||||||||| | ||||
Sbjct 2017 AAGATATACTTCCCACCAACTTACAAATACTCAAATAACTCGGATAGATATGCAGGAGGT 2076
Query 1393 GATCTGCATCCCAAGGAGAAACGTCGCACTCCTGCTTGGTGTGATAGGATATTGTGGTTT 1452
||| ||||||| |||||||||||||| |||||||||||||||||| | ||| | ||| |
Sbjct 2077 GATTTGCATCCAAAGGAGAAACGTCGTACTCCTGCTTGGTGTGATCGAATACTATGGCAT 2136
Query 1453 GGTGAAGGACTGCATCAGTTATCATACGTAAGAGGAGAGTCACGGTTCTCGGATCATAGA 1512
|| |||||||| ||||||||||| || |||||||| ||||||||||| || |||||||||
Sbjct 2137 GGAGAAGGACTACATCAGTTATCTTATGTAAGAGGGGAGTCACGGTTTTCTGATCATAGA 2196
Query 1513 CCGGTCTATGGCATTTTCTGTGCAGAGGTTGAGTCAGCTCATAATAGGTTAAAGCGAAC- 1571
||||| |||||||| ||| | ||||||||||||||| ||| || || | |||||||||
Sbjct 2197 CCGGTTTATGGCATATTCAGCGCAGAGGTTGAGTCAAATCACAAGAGATCAAAGCGAACC 2256
Query 1572 AACGAGTTACTCCACTTCACGGGTCCAAGCTGAAGAACTCTTACCTTACTCCCGTGGATA 1631
|| ||| |||||||| |||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 2257 AAT-AGTCACTCCACTGCACGGGTCGAAGCTGAAGAACTCTTACCTTACGCCCGCGGATA 2315
Query 1632 CACCGAGCT 1640
|||||||||
Sbjct 2316 CACCGAGCT 2324
Score = 627 bits (339), Expect = 1e-178
Identities = 601/725 (83%), Gaps = 28/725 (4%)
Strand=Plus/Plus
Query 4 AAGCTGGCATGGTCCAAGAAGATGGTTAGGAAATGGTTCAATATCAAAAGCAAAACAGAG 63
||| || ||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 580 AAGTTGTCATGGTCCAAGAAGATGGTGAGGAAATGGTTCAACATCAAAAGCAAAACTGAA 639
Query 64 GAGTTTCAAGCAGATGATCCTACTT-CTGC-TCGAGTTGAAGTAGAGCATAGAAGTAGCT 121
||||||||||||||| | || ||| || | |||||||||| ||||| |||| ||||
Sbjct 640 AAGTTTCAAGCAGATGTTTCT-CTTCCT-CAAGGAGTTGAAGTTGAGCACAGAAACAGCT 697
Query 122 TCTCAGCTGAGAAAGCACCTTCCACAATCAAGAATACCAAAACTGAGAAACTCAGTAAGA 181
|||||| |||| ||| || | |||||||||||| | ||||||||| ||||||| |||||
Sbjct 698 TCTCAG-AGAGAGAGC-CC-TGCACAATCAAGAAGAGCAAAACTGAAAAACTCAATAAGA 754
Query 182 ACTGGGAGCAGCAAGCTCGGCAAAGGAGAATGAATTATGAGAATCCTAGGATCATTGATG 241
||||||||||||||||| | ||||||| |||||| ||||| ||||| || ||||||||||
Sbjct 755 ACTGGGAGCAGCAAGCTAGACAAAGGAAAATGAACTATGAAAATCCCAGAATCATTGATG 814
Query 242 TCCAAAACTACAGCATCTTTGTAGCTACATGGAACGTAGCTGGACGCTCTCCTCCTTCAG 301
|||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 815 TCCAAAACCACAGCATCTTCGTAGCTACATGGAACGTTGCTGGACGCTCTCCTCCTGAAG 874
Query 302 ACTTAAACCTTGATGAGTGGCTTCATTCATCAGCTCCTGCAGATATATATGTACTCGGAT 361
| |||||||| || || ||||||||||| |||||||||||||||||||| || ||||| |
Sbjct 875 ATTTAAACCTCGACGAATGGCTTCATTCTTCAGCTCCTGCAGATATATACGTTCTCGGGT 934
Query 362 TCCAAGAGATTGTTCCTCTTAATGCTGGAAATGTCCTTGGAGCTGAAGACAATGGACCTG 421
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 935 TCCAAGAGATTGTTCCTCTTAATGCTGGTAATGTTCTTGGAGCTGAAGACAATGGTCCTG 994
Query 422 CTCAGAAATGGC-TCTCTCTTATCCGTAAAACGCTCAATAACCGACCAGGAACTAGTGGA 480
|| ||||||||| | || || ||| | |||||||||||||||| || ||| | ||
Sbjct 995 CTAAGAAATGGCAT-TCACTCATCAGGAAAACGCTCAATAACCTTCCCGGAGCAAG---- 1049
Query 481 ACCAGCGGTTATCACACGCCTTCCCCTATCCCTGTGCCTATGGCAGAGCTTGATGCTGAT 540
| || | | || || || || ||||| ||||| || || |||||| ||||||||||
Sbjct 1050 -C-AGTGCATGCCATACTCCATCGCCTATTCCTGTCCCCATTGCAGAGATTGATGCTGAC 1107
Query 541 TTCTCTGGATCCACAAGGCAAAAGAACTCTACTTTCTTCCACAGACGGTCTTTTCAGACC 600
||||| ||||| |||||||||||||| ||||||||| ||||| | ||||| |||||
Sbjct 1108 TTCTCAGGATCTTCAAGGCAAAAGAACGAGACTTTCTTCAACAGAAGATCTTTCCAGACG 1167
Query 601 CCGAG--TA-GTAC-ATGGA--A---TGATCCTTCCAT-TCCTCAGCCA-GGTCTTGACC 649
||||| || | | ||||| | ||| ||||| || || || ||| || |||||||
Sbjct 1168 CCGAGCGTATGGAGTATGGAGGAGAATGACCCTTCGATCTCA-CAACCACGG-CTTGACC 1225
Query 650 GTCGTTTCAGCGTCTGTGACCGTGTATTCTTCAGCCACAGGCCAAGTGATTTCGACCCAA 709
||||||||||||| ||||| || ||||||||||| || || ||||||||||| ||||| |
Sbjct 1226 GTCGTTTCAGCGTGTGTGATCGCGTATTCTTCAGTCATAGACCAAGTGATTTTGACCCGA 1285
Query 710 GTTTC 714
| |||
Sbjct 1286 GCTTC 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5