BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333922
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06170.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1925 0.0
> AT1G06170.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1884991-1886897 REVERSE LENGTH=1547
Length=1547
Score = 1925 bits (1042), Expect = 0.0
Identities = 1192/1266 (94%), Gaps = 3/1266 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGGAGGAGGCATGCTTGAAGAAATTGGGTGTTTTGATCCAAATGCTCCGGCAGAA 60
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 130 ATGGGAGGAGGAGGCATGTTTGAAGAAATTGGGTGTTTTGATCCAAATGCTCCGGCAGAA 189
Query 61 ATGACGGCTGAGAGCAGTTTCTCTCCGGCTGAGCCACCACCGACGATCACGGTGGTCGGT 120
||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 190 ATGACTGCTGAGAGCAGTTTCTCTCCGTCCGAGCCACCACCGACGATCACGGTCATCGGT 249
Query 121 AGCAACAGCAACAGCAACTGCAGTCTAGAAGATCTCTCTGAATTCCACCTCAGCCCACAA 180
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 250 AGCAACAGTAACAGCAACTGCAGTCTAGAAGATCTCTCTGCATTCCACCTCAGCCCACAA 309
Query 181 GACTCTTCTCTACCTACCTCAGCCTCAGCTTATGTTCATCAGTTTCACGTCAATGCTACG 240
||||||||||||||| |||||||||||||||||| ||||||| ||||| | ||||||||
Sbjct 310 GACTCTTCTCTACCTGCCTCAGCCTCAGCTTATGCTCATCAGCTTCACATTAATGCTACT 369
Query 241 CCTAATTGTGATCATCAATTCCAGAGTTCGATGCACCAAACCCTTCAAGGTCCATCGTAT 300
||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 370 CCTAATTGTGATCATCAATTCCAGAGTTCAATGCACCAAACCCTCCAAGATCCATCGTAT 429
Query 301 CCACAACAGTCGAATAATTGGGACAATGGTTACCAAGATTTTGCGAATTTGGGTCCTAAT 360
| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 430 GCGCAACAGTCGAATCATTGGGACAATGGTTACCAAGATTTTGTGAATTTGGGTCCTAAT 489
Query 361 CATACAACTCCTGACCTACTTAGTCTCTTGCAATTACCAAGATCCTCACTTCCGCCATTC 420
||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || |||
Sbjct 490 CATACCACTCCTGACCTACTCAGTCTCTTGCAATTGCCAAGATCCTCACTTCCACCTTTC 549
Query 421 GCAAACCCTAGCCTTCAAGATATTATCATGACAACATCTTCCTCTGTTGCCGCCTATGAC 480
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 550 GCAAACCCTAGCATTCAAGACATTATCATGACAACATCTTCCTCTGTCGCCGCCTATGAC 609
Query 481 CCGCTCTTCCACCTGAATTTCCCTTTGCAGCCTCCTAATGGGACTTTCATAGGAGTTGAT 540
||||||||||| |||||||| ||| |||||||||||||||||| |||||| ||||| |||
Sbjct 610 CCGCTCTTCCATCTGAATTTTCCTCTGCAGCCTCCTAATGGGAGTTTCATGGGAGTGGAT 669
Query 541 CAAGATCAAACTGAGATAGAAAACCAAGGAGTGAATTTGATGTATGATGAAGAAAACAAC 600
||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 670 CAAGATCAAACTGAG--A-CTAACCAAGGAGTGAACTTGATGTATGATGAAGAAAACAAC 726
Query 601 AACCTAGACAATGGTCTAAACCGTAAAGGGAGAGGATCGAGAAAGCGGAAAGTTTTCCCT 660
||||| ||| ||||||| ||||||||||| |||||||||| |||||| ||| ||||||||
Sbjct 727 AACCTCGACGATGGTCTTAACCGTAAAGGCAGAGGATCGAAAAAGCGTAAAATTTTCCCT 786
Query 661 ACTGAACGCGAGAGAAGAGTTCACTTCAAAGACCGGTTTGGTGACTTAAAGAATCTAATT 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ACAGAACGCGAGAGAAGAGTTCACTTCAAAGACCGGTTTGGTGACTTAAAGAATCTAATT 846
Query 721 CCAAATCCTACCAAGAATGATAGAGCATCAATCGTCGGAGAAGCGATAGATTACATCAAA 780
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CCAAATCCCACCAAGAATGATAGAGCATCAATCGTCGGAGAAGCGATAGATTACATCAAA 906
Query 781 GAGTTGTTAAGGACGATCGATGAGTTCAAGCTGCTAGTGGAAAAGAAAAGAACAAAACAG 840
|||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 907 GAGTTGCTAAGGACGATCGATGAGTTCAAGCTGCTAGTGGAAAAGAAGAGAGTGAAACAG 966
Query 841 CGGAACAGAGAAGGAGATGATGTTATTGATGAGAACTTCAAGGCTCAAAGCGAAGTAGTA 900
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 967 AGGAACAGAGAAGGAGATGATGTTGTTGATGAGAACTTCAAGGCTCAAAGCGAAGTAGTA 1026
Query 901 GAACAATGTTTGATCAATAAGAAGAACAATGCCTTGAGATGCTCATGGCTGAAGAGGAAA 960
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1027 GAACAATGTTTGATCAATAAGAAGAACAATGCCTTGAGATGCTCATGGCTCAAGAGGAAA 1086
Query 961 TCGAAATTCACTGAGGTCGATGTACGTATCATAGACGATGACGTAACCATCAAGATCGTG 1020
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1087 TCGAAATTCACTGATGTCGATGTACGTATCATAGACGATGAAGTTACCATCAAGATCGTG 1146
Query 1021 CAGAAGAAGAAAATCAATTGTTTGGTCTTTGTATCCAAAGTCGTTGACCAGCTTCAGCTT 1080
|||||||||||||||||||||||| | || |||||||||||||||||||| ||| |||||
Sbjct 1147 CAGAAGAAGAAAATCAATTGTTTGTTGTTCGTATCCAAAGTCGTTGACCAACTTGAGCTT 1206
Query 1081 GATCTTCACCATGTAGCTGGTGCACAAATCGGAGAGCACCACAGTTTCTTGTTCAACGCC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 GATCTTCACCATGTAGCTGGTGCACAAATCGGAGAGCACCACAGTTTCTTGTTCAACGCC 1266
Query 1141 AAGATTTGTGAAGGATCTAGTGTTTATGCAAGTGCCATAGCAGATAGAGTAATGGAAGTG 1200
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 AAGATTAGTGAAGGATCTAGTGTTTATGCAAGTGCCATAGCAGATAGAGTAATGGAAGTG 1326
Query 1201 TTGGAGAAACAATACATGGAAGCTCTTTCGACCAATAATGGCTATCACTGCTACTCCAGT 1260
||| |||||||||||||||||||||||||| | |||||||| |||||||| ||||| |||
Sbjct 1327 TTGAAGAAACAATACATGGAAGCTCTTTCGGCGAATAATGGTTATCACTGTTACTCTAGT 1386
Query 1261 GATTAA 1266
||||||
Sbjct 1387 GATTAA 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5