BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333928
Length=2304
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06230.1 | Symbols: GTE4 | global transcription factor group... 3443 0.0
> AT1G06230.1 | Symbols: GTE4 | global transcription factor group
E4 | chr1:1907089-1910848 FORWARD LENGTH=3194
Length=3194
Score = 3443 bits (1864), Expect = 0.0
Identities = 2174/2320 (94%), Gaps = 35/2320 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCGGAGCCTGTTAACGTAGGAGAAGGTATCGATGGAGCTAGAGATAAGCAAAAC 60
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 432 ATGGCTTCGGAGCCTGTTAACGGAGGAGAAGGTATCGATGGAGCTAGAGAGAAGCAAATC 491
Query 61 ATTAAAGTTTATAAGAGGAAAGGCAAAGGTCAGAGAAAACAGTCACCTTTCTTTGCCTTT 120
|| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||
Sbjct 492 ATCAAAGTTTATAAGAGGAAAGGCAAAGGTCAAAGAAAACAGTCATCTTTCTTTGCCCTT 551
Query 121 GAGGCTAGTGTTGGTGCCATCGATAAACCAGAGGGGCAATTAGATAAC--G-A-G----- 171
||||| ||||||||| ||||| ||||||| |||||| ||| | | |
Sbjct 552 GAGGC---------TGCCATCGAGAAACCTGAGGGGCTATTAGAAAACGAGAATGATAAC 602
Query 172 AATGATGTGAGTCCT-CCTGAAACCCTAGCTCGAGAGTCGGTGGATCCTATA-TCTGTGG 229
||||||||||||||| || ||||| ||||||| ||||| | |||||||||| | |||||
Sbjct 603 AATGATGTGAGTCCTGCC-GAAACTCTAGCTCCAGAGTTTGAGGATCCTATAGT-TGTGG 660
Query 230 TGAAGAATTCTGTTGAAGAAGCTGCTCTTGGGACTAACTCTCAGGGAGACAATGTGGCCA 289
||||||||||| | ||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 661 TGAAGAATTCTATCGAAGAGGCTGCTCTTGGGACTAATTCTCATGGAGACAAAAACTTAA 720
Query 290 CT-ATAGCCAAAAACT--CAACTGTGCTTGGTGATGATTCAGACAAAGTCATTGACAAGC 346
|| | || | || ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 721 CTGA-AG-CGCCTTCTGAAAAC-CTGCCTGGTGATGATTCAGACAAAGTCATTGACAAGC 777
Query 347 CTCTTATCGAAGCATTTCCTCAAGC-CGAACCTCAGGATGATACGAGTTTGGTCGCTATG 405
||||| ||||||||||| ||||||| | |||| ||||||||| | ||||||| |||||||
Sbjct 778 CTCTTGTCGAAGCATTTTCTCAAGCTC-AACCACAGGATGATGCCAGTTTGGCCGCTATG 836
Query 406 GA-AACGTCTGTCGAAGTACCCTCTCAGAGACACAAAGCTCAAGATGATGTGAATACAGT 464
|| || ||||| |||||||| ||||||| | |||||||||||||||||| ||||||||
Sbjct 837 GACAA-GTCTGAAGAAGTACCTTCTCAGATCCCCAAAGCTCAAGATGATGTCAATACAGT 895
Query 465 GGTTGTCGATGAGAACTCTATCAAGGAACCTCCTAAAATCCTTGCCCATGAAGATGATAC 524
|||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 896 GGTTGTTGATGAAAACTCTATCAAGGAACCTCCTAAAAGCCTTGCCCAAGAAGATGTTAC 955
Query 525 TACTGTGATTGTTGACAAGAACCCTATTGAAGCACCTTCTCAAACTCTGTCCGTGGAAGA 584
|||||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||
Sbjct 956 CACTGTGATTGTTGACAAGAACCCTATCGAAGCACCTTCTCAAACCCTATCCCTGGAAGA 1015
Query 585 TGGCAATACTCTTGTTGTCGACAAGAATCCCATTGAAGTGTCTTCTGAGGAAGATGTCCA 644
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGGTGATACTCTTGTTGTTGACAAGAATCCCATTGAAGTGTCTTCTGAGGAAGATGTCCA 1075
Query 645 CGTGGTAGATGCAGATAATCTTATAAAAGAAGCTCATCCTGAAAACTTTGTGGAAAGAGA 704
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CGTGATAGATGCAGATAATCTAATAAAAGAAGCTCATCCTGAAAACTTTGTGGAAAGAGA 1135
Query 705 TGCCACTGATGCCCAACAACCCGCAGGGCTTACTTCTGATTCTGCTCGTGCTACTGCTGC 764
| |||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 1136 TACCACTGATGCCCAACAGCCCGCTGGGCTTACCTCTGATTCTGCTCATGCTACTGCTGC 1195
Query 765 TGGAAGCATGCCAATGGAGGAGGACGCAGATGGACGTATTAGGATACATGTAGCTTCCAC 824
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1196 TGGAAGCATGCCAATGGAGGAGGACGCAGATGGACGTATTAGGATACATGTAGCCTCCAC 1255
Query 825 AACGAAGCAACAGAAAGAAGAGATCAGGAAGAAGCTTGAAGATCAGCTTAGCGTGGTCAG 884
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1256 AACGAAGCAACAGAAAGAGGAGATCAGGAAGAAGCTTGAAGATCAGCTTAACGTAGTCAG 1315
Query 885 AGGAATGGTAAAGAAGATAGAGGATAAAGAGGGCGAGATTGGTGCATATAACGATTCTCG 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AGGAATGGTAAAGAAGATAGAGGATAAAGAGGGCGAGATTGGTGCATATAACGATTCTCG 1375
Query 945 TGTTTTGATTAACACTGGTATTAATAATGGAGGAGGAAGGATTCTGTCAGGGTTTGCCTC 1004
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1376 TGTTTTGATTAACACTGGTATTAATAATGGAGGAGGGAGGATTCTGTCAGGGTTTGCATC 1435
Query 1005 AGCTGGACTTCCTCGTGAGGTCATCAGAGCACCAAGGCCTGTAAATCAACTAAGTATATC 1064
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1436 AGCTGGACTTCCTCGTGAGGTCATTAGAGCACCAAGGCCTGTAAATCAACTAAGTATATC 1495
Query 1065 AGTGTTGGAGAATACTCAGGGAGTCAATGAGCATGTGGAAAAGGAGAAAAGAACACCCAA 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AGTGTTGGAGAATACTCAGGGAGTCAATGAGCATGTGGAAAAGGAGAAAAGAACACCCAA 1555
Query 1125 GGCAAATCAGTTTTATAGAACTTCAGAGTTTTTACTAGGTGACAAGTTACCACCTGCAGA 1184
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1556 GGCAAATCAGTTTTATAGAAATTCAGAGTTTTTACTTGGTGACAAGTTACCACCTGCAGA 1615
Query 1185 GAGTAACAAGAAATCAAAATCGAGTTCAAAGAAGCAAGGAGGGGATGTTGGGCATGGTTT 1244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1616 GAGTAACAAGAAATCAAAATCGAGTTCAAAGAAGCAAGGAGGGGACGTTGGGCATGGTTT 1675
Query 1245 TGGTGCAGGGTCTAAAGTTTTCAAGAATTGCAGTGCTCTGCTTGAAAGGCTGATGAAGCA 1304
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TGGTGCAGGGACTAAAGTTTTCAAGAATTGCAGTGCTCTGCTTGAAAGGCTGATGAAGCA 1735
Query 1305 TAAGCATGGTTGGGTGTTCAATGCTCCAGTAGACGTGAAGGGTCTAGGTTTGCTTGATTA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1736 TAAGCATGGTTGGGTGTTCAATGCTCCAGTAGACGTGAAGGGTCTAGGTTTACTTGATTA 1795
Query 1365 TTACACCATTATCGAGCACCCTATGGATTTGGGAACTATCAAGTCTGCGTTAATGAAGAA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 TTACACCATTATCGAGCACCCTATGGATTTGGGAACTATCAAGTCTGCGTTAATGAAGAA 1855
Query 1425 TTTGTACAAGTCACCAAGAGAATTTGCAGAGGATGTTAGACTTACTTTCCACAATGCCAT 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1856 TTTGTACAAGTCACCAAGAGAATTTGCAGAGGATGTTAGACTTACTTTCCACAATGCTAT 1915
Query 1485 GACTTACAACCCAGAAGGACAAGATGTCCATCTCATGGCGGTAACACTATTACAGATCTT 1544
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1916 GACTTACAACCCAGAAGGACAAGATGTCCATCTCATGGCGGTTACGCTATTACAGATCTT 1975
Query 1545 TGAGGAAAGATGGGCTGTAATAGAGGCAGATTATAATCGTGAAATGAGATTTGTCACTGG 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TGAGGAAAGATGGGCTGTAATAGAGGCAGATTATAATCGTGAAATGAGATTTGTCACTGG 2035
Query 1605 TTATGAAATGAATCTTCCAACTCATACAATGAGGTCTAGACTGGGTCCTACGATGCCGCC 1664
|||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 2036 TTATGAAATGAACCTTCCAACTCCTACAATGAGGTCTAGACTGGGTCCTACAATGCCACC 2095
Query 1665 ACCACCTATTAATGTGAGGAATACGATAGACAGAGCAGACTGGAGTAATCGCCAACCGAC 1724
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 2096 ACCACCTATCAATGTGAGGAATACGATAGACCGGGCAGACTGGAGTAATCGCCAACCAAC 2155
Query 1725 TACAACACCTGGAAGAACACCGACCAGTGCAACACCTTCTGGAAGGACACCTGCTCTGAA 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 TACAACACCTGGAAGAACACCGACCAGTGCAACACCTTCTGGAAGGACACCTGCTCTGAA 2215
Query 1785 GAAGCCGAAGGCAAACGAACCAAATAAAAGAGATATGACGTATGAGGAGAAGCAGAAGCT 1844
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 GAAGCCAAAGGCAAACGAACCAAATAAAAGAGATATGACGTATGAGGAGAAGCAGAAGCT 2275
Query 1845 TAGTGGCCACTTGCAGAACTTGCCTCCAGATAAACTAGATGCAATTGTACAAATTGTTAA 1904
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2276 TAGTGGCCATTTGCAGAACTTGCCTCCAGATAAACTAGATGCAATTGTACAAATCGTTAA 2335
Query 1905 CAAGAGGAATACTGCTGTGAAGCTACGGGATGAAGAAATTGAAGTCGATATTGATAGTGT 1964
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2336 CAAGAGGAATACTGCGGTGAAGCTACGGGATGAAGAAATTGAAGTTGATATTGATAGTGT 2395
Query 1965 TGATCCAGAGACCTTGTGGGAGTTGGACAGATTTGTGACCAACTATAAAAAGGGCTTAAG 2024
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2396 TGATCCAGAGACCCTGTGGGAGTTGGACAGATTTGTAACCAACTATAAAAAGGGCTTGAG 2455
Query 2025 CAAGAAAAAGAGAAAAGCTGAGCTAGCTATTCAAGCTAGAGCAGAAGCCGAGAGGAATAG 2084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2456 CAAGAAAAAGAGAAAAGCTGAGCTAGCTATTCAAGCTAGAGCAGAAGCCGAGAGGAATAG 2515
Query 2085 CCAACAACAGATGGCTCCAGCACTAGTGGCGCATGAGTTTTCTAGGGAGGGTGGCAACAC 2144
||||||||||||||||||||||| || ||| |||||||||||||| ||||||||||||||
Sbjct 2516 CCAACAACAGATGGCTCCAGCACCAGCGGCACATGAGTTTTCTAGAGAGGGTGGCAACAC 2575
Query 2145 AGCTAAAAAGACACTTCCTACACCACTACCTTCTCAAGTGGAGAAGCAAAACAATGAGAC 2204
||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 2576 AGCTAAAAAGACACTACCTACGCCATTACCTTCTCAAGTGGAGAAGCAAAACAATGAGAC 2635
Query 2205 AAGCAGATCAAGTAGTTCAAGCAGCTCTTCCAGTGGTTCCAGCTCTTCTAGTGATTCGGA 2264
|||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||
Sbjct 2636 AAGCAGATCAAGTAGTTCAAGCAGCTCTTCCAGT--T-CCAGCTCGTCTAGTGATTCAGA 2692
Query 2265 CAGCGATAGCTCTTCGTCATCTGGATCAGATCAGACCTAG 2304
|||||| |||||||| ||||||||||||||||||||||||
Sbjct 2693 CAGCGACAGCTCTTCATCATCTGGATCAGATCAGACCTAG 2732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114356841510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5