BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333988

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06923.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   800    0.0  


> AT1G06923.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: ovate family protein 17 (TAIR:AT2G30395.1); Has 35333 
Blast hits to 34131 proteins in 2444 species: Archae - 798; 
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; 
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr1:2126749-2128060 FORWARD LENGTH=1228
Length=1228

 Score =  800 bits (433),  Expect = 0.0
 Identities = 490/517 (95%), Gaps = 5/517 (1%)
 Strand=Plus/Plus

Query  1    ATGAGACTGAAGGCAAGTTTGATTAGCTTGAAATCAAAGCTTTCAAAATCATGCAACAGA  60
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  54   ATGAGACTGAAGTCAAGTTTGATTAGCTTGAAATCAAAGCTTTCAAAATCATGCAACAGA  113

Query  61   CTCATCTCCTTCTTCCATGCTCGTTTTCACAATGTCAATACGACCACACAATCTTCTTCT  120
             ||||||||||||||||||||||||||| ||||||||||   |||||||||||||| || 
Sbjct  114  TTCATCTCCTTCTTCCATGCTCGTTTTCGCAATGTCAAT---ACCACACAATCTTCATCA  170

Query  121  TCTAGTTTGTTGTCTCGTCTCTGTTTTCTCAATACTGATAAGGAGCAGAGGATGAGCCAG  180
            |||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  171  TCTTCTTTGTTGTCTCGTCTCTGTTTTCTCAATACTAATAAGGAGCAGAGGATGAGCCAG  230

Query  181  ATAAGACCCAGAAGTTCACCGTCTAGTCTGATCGATGATTCCAAGCTTCTGCATTCAAGA  240
            || |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  231  ATCAGACCCAGAAATTCCCCGTCTAGTCTGATCGATGATTCCAAGCTTCTGCATTCAAGA  290

Query  241  AAGATGTTTCCTTTGGCTGTGACGCAAAGGAACAAGAAAGCGAGGACGAGTCAAAGACAT  300
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  291  AAGATGTTTCCTTTGGCTATGACGCAAAGGAACAAGAAAGCGAGGACGAGTCAAAGACAT  350

Query  301  ATGCTGAAGGAAGACGGTGTGAAAGAGGCTTGCACAA-ACTTCGAGAACTACATGATCCA  359
            ||| | |||||||| ||||||||||||||||||| || | ||||||||||| ||||||||
Sbjct  351  ATGTTAAAGGAAGATGGTGTGAAAGAGGCTTGCAGAAGA-TTCGAGAACTATATGATCCA  409

Query  360  TATGATCGTTGAAGATGGGAAATTAGATGACTTGATGGACATGGAAGAGCTTCTCTATTA  419
            |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  410  TATGTTCGTTGAAGATGGGAAAATAGATGACTTGATGGACATGGAAGAGCTTCTCTATTA  469

Query  420  TTGGAAGAATCTTAATAGTCCTATCTTCATTGATCTTGTGACTAGATTCTATGGAGAGCT  479
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  470  TTGGAAGAATCTTAATAGTCCAATCTTCATTGATCTTGTGACTAGATTCTATGGAGAGCT  529

Query  480  CTGCACTGACCTGTTTCCAAGCGACAATGACGGTTAA  516
            ||||||||||||||||||||||||| |||||| ||||
Sbjct  530  CTGCACTGACCTGTTTCCAAGCGACCATGACGATTAA  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5