BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334007
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07060.1 | Symbols: | unknown protein; Has 30 Blast hits to... 822 0.0
> AT1G07060.1 | Symbols: | unknown protein; Has 30 Blast hits
to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:2167107-2168397 REVERSE
LENGTH=733
Length=733
Score = 822 bits (445), Expect = 0.0
Identities = 522/559 (93%), Gaps = 5/559 (1%)
Strand=Plus/Plus
Query 1 ATG-TCAGAGTCGATGATCACTGATCAGACTTATCTCTTTCTCAATCGGGTCCAAGATAG 59
||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 78 ATGTTCAGATTCGATGATCGCTGATCAGACTTATCTCTTTATCAATCGGGTCCAAGACAG 137
Query 60 AAGGTTTGATGAAGAATCTCTTCGAATTCTCGAATTGTCTCTGGTTGCAATGAATGCGAA 119
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 138 AAGGTTCGATGAAGAATCTCTTCGGATTCTCGAGTTGTCTCTGGTTGCAATGAATGTGAA 197
Query 120 ATCGTTTTACGAAGTTAGATCCCGCTTGAGAGATTTCCTGAAATCGGAATCGGTTGCTAT 179
|||||||| ||||||||||| || |||||||||||| ||| ||| |||||||||| |||
Sbjct 198 ATCGTTTTTGGAAGTTAGATCTCGATTGAGAGATTTCATGAGATCTGAATCGGTTGTTAT 257
Query 180 ATTCGGTGAGCTCACCGGAGAATCCATGGTCGCAAAACTCTCCGTACTTGAATTCTTCGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 ATTCGGTGAGCTCACCGGAGAATCCATGGTCGCAAAACTCTCCGTACTTGAATTCTTCGC 317
Query 240 GCGTGCTTTTGCTCTTATCGGTGATATGGAGAGTTGTTTGGCTATGAGGTATGAGGCATT 299
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TCGTGCTTTTGCTCTTCTCGGTGATATGGAGAGTTGTTTGGCTATGAGGTATGAGGCATT 377
Query 300 GAACTTGCGGGAGCTCAAGTCTCCAAGCTGTTTGTGGTTAAGGGTTTCACATTCAGAATG 359
||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 378 GAATTTGCGGCAGCTCAAGTCTCCTAGCTGTTTGTGGTTAGGGGTTTCACATTCAGAATG 437
Query 360 GACCAAATTTGCAGTCCAATCTATGGAAAATGGATTCCCTTCTATTGCAGGAAAGGCGTC 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 438 GACCAAATTTGCAGTCCAATCTATGGAAAATGGATTCCCTTCCATTGCAGGAAAGGCGTC 497
Query 420 TGAAAATGCACTGTTGAGTCTTAAGAAGGATAGTCTTGAT-GAGCCAAAATTAGAAGACT 478
||||||||| |||||||| |||||||||||||||||| || || ||||||| |||||| |
Sbjct 498 TGAAAATGCCCTGTTGAGCCTTAAGAAGGATAGTCTT-ATTGAACCAAAATCAGAAGA-T 555
Query 479 A-TTCAGAAATTTTGAATGCTGCTGAGAAAGTAAGGAGACTACGGGATTCGGCTGCCTCG 537
| ||| || |||||| |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 556 AATTCTGACATTTTGGATGCTGCTGAGAAAGTAAGGAGACTAAGGGATTCAGCTGCCTCG 615
Query 538 TTAACATCTTCACATTCAG 556
|||||||||||||||||||
Sbjct 616 TTAACATCTTCACATTCAG 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5