BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334013
Length=2118
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07150.1 | Symbols: MAPKKK13 | mitogen-activated protein kin... 1801 0.0
AT1G07140.1 | Symbols: SIRANBP | Pleckstrin homology (PH) domai... 1184 0.0
AT2G30060.1 | Symbols: | Pleckstrin homology (PH) domain super... 619 3e-176
> AT1G07150.1 | Symbols: MAPKKK13 | mitogen-activated protein kinase
kinase kinase 13 | chr1:2194279-2195796 REVERSE LENGTH=1518
Length=1518
Score = 1801 bits (975), Expect = 0.0
Identities = 1267/1401 (90%), Gaps = 48/1401 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAACAGAGTATCAGAAACATTTGttcttcttc-ttcttctt-taat-gtcatct 57
|||||||||||||| |||||||||| |||||||||||| || | || | | |||||
Sbjct 19 ATGGAGAAACAGAGCATCAGAAACACTTGTTCTTCTTCTTTAATGTTATCCTCACCATCT 78
Query 58 tcttcttGGGTTCGTGGTGCGTGTATCGGAAGAGGTTGTTTCGGTGCAGTTAGTACGGCG 117
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 79 TCTTTTTGGGTTCGTGGTGCGTGTATCGGCAGAGGTTGTTTCGGTGCAGTTAGTACGGCG 138
Query 118 ATCAGCAAAACCAACGGTGAAGTTTTTGCCGTGAAATCCGTGGATCTCACCACTTGTCTC 177
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 139 ATCAGCAAAACCAACGGTGAAGTTTTCGCCGTGAAATCCGTGGATCTCGCCACGAGTCTC 198
Query 178 CCCACCCAATCAGAGTCTCTCGAGAACGAAATCTCTGTCCTCTGTTCGCTCAAGCCTCAC 237
||||| |||||||||||||||||||||||||| |||||| || | ||||| |||||||||
Sbjct 199 CCCACTCAATCAGAGTCTCTCGAGAACGAAATATCTGTCTTCCGCTCGCTAAAGCCTCAC 258
Query 238 CCTCACATCGTGAAGTTTCTCGGCGACGGAGTCTCGAAAGAAGGAACGACGACGTTTAGG 297
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CCTTACATCGTGAAGTTTCTCGGCGACGGAGTCTCGAAAGAAGGAACGACGACGTTTAGG 318
Query 298 AATCTCTACTTGGAGTATCTACCAGAA-GGTGACGTGGCTAATTACACTGTTGGAGGAAT 356
||||||||||| |||||||| ||| || ||||||||||||| | ||| | |||||||
Sbjct 319 AATCTCTACTTAGAGTATCTCCCA-AACGGTGACGTGGCTAGTCACAGAGCCGGAGGAAA 377
Query 357 TAA-CGA---CGAGACTCTGCTCCAGCGTTACACGGCGTGTCTTGTCTCTGCTCTCCGCC 412
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 -AATCGAAGACGAGACTCTGCTCCAGCGTTACACGGCGTGTCTTGTCTCTGCTCTCCGCC 436
Query 413 ACGTCCACTCTCATGGATTCGTTCACTGCGACGTCAAGGCGAGAAACGTCCTCGTCAGCC 472
|||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 437 ACGTACACTCTCAAGGATTCGTTCACTGCGACGTCAAGGCGAGGAACATCCTCGTCAGCC 496
Query 473 AAAGCTCCATGATCAAGCTAGCCGATTTCGGGTCGGCGTTCAGAATCCATACACCAACAG 532
||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| | |
Sbjct 497 AAAGCTCCATGGTCAAGTTAGCCGATTTTGGGTCGGCGTTCAGAATCCACACACCGAGGG 556
Query 533 CACAGATCACGCCACGTGGAAGCCCGCTTTGGATGGCTCCGGAGGTGATCAGACGAGAGT 592
| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 557 CTCTGATCACGCCACGTGGAAGTCCGCTTTGGATGGCTCCGGAGGTGATCAGACGAGAGT 616
Query 593 ACCAAGGTCCGGAGAGCGACGTCTGGTCTCTCGGCTGCACGATCATCGAGATGTTTACTG 652
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 617 ACCAAGGTCCGGAGAGTGACGTCTGGTCTCTCGGCTGCACGATCATCGAGATGTTCACTG 676
Query 653 GGAAACCCGCTTGGGAAGACCACGGGATTATAGACTCGCTGAGTCGAATCGGTTTCTCCG 712
||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |
Sbjct 677 GGAAACCCGCTTGGGAAGACCACGGAATT---GACTCGCTGAGTCGAATCAGTTTCTCTG 733
Query 713 ACGAGTTACCGGTTTTCCCCTCGAAGCTGTCGGAAATCGGCTGTGACTTCCTAGAAAAGT 772
|||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct 734 ACGAGTTACCGGTTTTCCCCTCGAAGTTGTCGGAAATCGGCCGTGATTTCCTAGAAAAGT 793
Query 773 GTCTAAAGAGAGACCCGAATCAGAGATGGAGTTGCGATCAGCTTTTGCAGCATCCTTTTC 832
|||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 794 GTCTGAAGCGAGACCCGAATCAGAGGTGGAGTTGCGATCAGCTTTTGCAGCATCCATTTC 853
Query 833 TGTCTCAGTGTCACAACTCGTCTCCGACTGAGTCATCTCCGCGTTGCGTACTTGACTGGG 892
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 854 TCTCTCAGTGTCACAACTCATCTCCGACTGAGTCATCTCCGCGTTGCGTACTTGACTGGG 913
Query 893 TCAACTCCGGATTTGACTTAGAAGAAGAAGAGGAGGAAGTAGGAAGATCAGAATTCGAAG 952
||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 914 TCAACTCGGGGTTTGACTTAGAAGAAGAAGAAGAGGAAGTAGGGAGATCAGAATTCGAAG 973
Query 953 ACGCGGCGATGGCAAGAATTTGTAATTTGGCGACGACCGGAGGGGCAATTTGGGAATCAG 1012
||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 974 ACGCGGCGAAGGCAATAATTTGTAATTTGGCGACGACCGGAGGAGTAATTTGGGAGTCAG 1033
Query 1013 ATGGTTGGGTGGAAGTCAGATGCCACTCTTCGGAAGAGGAAGGGACAAGAATGGAATATT 1072
|||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1034 ATGGTTGGGTGGAAGTTAGATGCCACGCTTCGGAAGAGGAAGGGACAACAATGGAATATT 1093
Query 1073 CGGGATCCACAAGGGTAGTATCGGCATATAACACATCATCGGATCCGTACGATGACGTG- 1131
|||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct 1094 CGGGATCCACAAGGGTAGAATCGGAATATAACACATCATCGGATCCAAACGATGACGTGG 1153
Query 1132 C------C--G---ATAATTGACGTTT--ATGT----G--TTT-CCGCCGGGAAACGGGG 1171
| | | ||||||||||||| |||| | ||| ||||| ||||||||||
Sbjct 1154 CTGGTGACTCGGCGATAATTGACGTTTCTATGTCTCAGAATTTACCGCCTGGAAACGGGG 1213
Query 1172 GATCGGCGGCGGCGCTGCTGCCATATGAATTAGTGATGGTTTTACATTTATTAATGGAAA 1231
|||||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||||
Sbjct 1214 GATCGGCGGCGGCGCTGC--C-ATATGAATTTGTGGTGGTTTTACATTTATTAATGGAAA 1270
Query 1232 TTACGGTTTATACTACATGTGTCTTTAGCAAAATTGTCCTCATTATGAATTGTTGTTATC 1291
||| |||||||||||||||| ||||||| ||||||| |||| |||| ||| | |||
Sbjct 1271 TTATGGTTTATACTACATGTATCTTTAGGGAAATTGTTCTCACTATGTATT-T-GTT--- 1325
Query 1292 AGTATCATCGTGATAATAATAA-CAATAAACTCGAAACGTTGTCTTTTAATCACAGCCTC 1350
|||||| || ||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 1326 -GTATCA--GT-ATAATCA-AAGCAATAAACTCGAAACGTTGTCTTTTAATCACAGCCTC 1380
Query 1351 AAGTTTTGTTTGTTTGCACAT 1371
|||||||||||||||||||||
Sbjct 1381 AAGTTTTGTTTGTTTGCACAT 1401
> AT1G07140.1 | Symbols: SIRANBP | Pleckstrin homology (PH) domain
superfamily protein | chr1:2191723-2193793 REVERSE LENGTH=1429
Length=1429
Score = 1184 bits (641), Expect = 0.0
Identities = 698/726 (96%), Gaps = 1/726 (0%)
Strand=Plus/Plus
Query 1394 GCGAACAATTGAATTCACGAGGAAATCTCAGT-AATACTATGGCGACCAACGAACCCGAG 1452
|||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 67 GCGACCAATTGAATCCACGAGGAAATCTCAGTAAATACTATGGCGACCAACGAACCCGAG 126
Query 1453 CACGAGCACAGAGACGAGGAAGAGGCCGGAGCTAACGAGGATGAGGACACCGGAGCTCAG 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CACGAGCACAGAGACGAGGAAGAGGCCGGAGCTAACGAGGATGAGGACACCGGAGCTCAG 186
Query 1513 GTCGCTCCGATCGTTAGGCTTGAGGAGGTTGCCGTCACTACCGGCGAGGAAGACGAAGAC 1572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GTCGCTCCGATCGTTAGGCTTGAGGAGGTTGCCGTCACTACCGGCGAGGAAGACGAAGAT 246
Query 1573 GCCGTCCTCGATCTGAAATCAAAGCTGTATCGGTTCGATAAGGATGCGAATCAGTGGAAA 1632
|||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 247 GCCGTCCTTGATCTGAAATCGAAGCTTTATCGATTCGATAAGGATGCGAATCAGTGGAAG 306
Query 1633 GAGAGAGGAGCTGGTACTGTCAAGCTCTTAAAGCATAAAAACACTGGGAAGATTCGTCTC 1692
|||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct 307 GAGAGAGGAGCTGGTACTGTGAAGTTCTTAAAGCATAAGAACACTGGGAAGATTCGTCTC 366
Query 1693 GTTATGAGGCAATCGAAAACTTTGAAGATCTGTGCTAATCACTTCGTTAAATCGGGCATG 1752
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GTTATGAGGCAATCTAAAACTTTGAAGATCTGTGCTAATCACTTCGTTAAATCGGGCATG 426
Query 1753 AGTGTTCAGGAGCACGTTGGGAATGAAAAGTCATGTGTGTGGCACGCTCGTGACTTTGCT 1812
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 AGTGTTCAGGAACACGTTGGGAATGAAAAGTCATGTGTGTGGCACGCTCGTGACTTTGCT 486
Query 1813 GATGGTGAACTCAAGGATGAGCTTTTCTGTATCAGATTTGCTTCAATTGAGAATTGCAAA 1872
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 487 GATGGTGAACTCAAGGATGAGCTTTTCTGTATCCGATTTGCTTCTATTGAGAATTGCAAA 546
Query 1873 ACATTTATGCAAAAGTTCAAGGAAGTTGCTGACTCTGAAGAAGAGAAAGAAGAGAGCAAA 1932
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 547 ACATTTATGCAAAAGTTCAAGGAAGTTGCTGAGTCTGAAGAAGAGAAAGAAGAGAGCAAA 606
Query 1933 GATGCCTCTGACACTGCTGGTCTTCTTGAGAAATTGACTGTGGAAGAGACAAAAACAGAG 1992
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 607 GATGCCGCTGACACTGCTGGCCTTCTTGAGAAATTGACTGTGGAAGAGACAAAAACGGAG 666
Query 1993 GAGAAAACCGAATCAAAAGCTGTGGAGACGGCgaagactgaagtgaaagcagaagaaaag 2052
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 667 GAGAAAACCGAAGCGAAAGCTGTGGAGACGGCAAAGACTGAAGTGAAAGCAGAAGAAAAG 726
Query 2053 aaagagagcgaggcagagaaatctggtgaagaaaagaaaattgaagaaaCTGGTCCCTCA 2112
||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 727 AAAGAGAGCGAGGCAGAGAAATCTGGTGAAGCAAAGAAAACAGAAGAAAGTGGTCCCTCA 786
Query 2113 ACTTAA 2118
|| |||
Sbjct 787 ACATAA 792
> AT2G30060.1 | Symbols: | Pleckstrin homology (PH) domain superfamily
protein | chr2:12826915-12828919 FORWARD LENGTH=1142
Length=1142
Score = 619 bits (335), Expect = 3e-176
Identities = 478/547 (87%), Gaps = 10/547 (2%)
Strand=Plus/Plus
Query 1440 CAACGAACCCGAGCACGAGCACAGAGACGAGGAAGAGGCCGGAGCTAACGAGGATGAGGA 1499
|||||| ||||||| ||| |||||||||| |||||| | ||||| ||||| ||||| ||
Sbjct 135 CAACGAGCCCGAGCGTGAGAACAGAGACGAAGAAGAGACTGGAGCCAACGAAGATGAAGA 194
Query 1500 CACCGGAGCTCAGGTCGCTCCGATCGTTAGGCTTGAGGAGGTTGCCGTCACTACCGGCGA 1559
|||||| |||||||| ||||| ||||| |||||||| || || |||||||| ||||| ||
Sbjct 195 CACCGGTGCTCAGGTTGCTCCTATCGTCAGGCTTGAAGAAGTCGCCGTCACCACCGGTGA 254
Query 1560 GGAAGACGAAGACGCCGTCCTCGATCTGAAATCAAAGCTGTATCGGTTCGATAAGGATGC 1619
|||||||||||| || |||||||||||||||| ||| ||||||| || ||||| ||||
Sbjct 255 AGAAGACGAAGACACCATCCTCGATCTGAAATCGAAGTTGTATCGATTTGATAAAGATG- 313
Query 1620 GAA-TCAGTGGAAAGAGAGAGGAGCTGGTACTGTCAAGCTCTT-AAAGCATAAAAACACT 1677
||| ||||||||| |||||||| ||||||||||| ||| | || ||| |||| | ||
Sbjct 314 GAAGTCAGTGGAAGGAGAGAGGTGCTGGTACTGTTAAGTTTTTGAAA-CATAGAGTTTCT 372
Query 1678 GGGAAGATTCGTCTCGTTATGAGGCAATCGAAAACTTTGAAGATCTGTGCTAATCA-CTT 1736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 373 GGGAAGATTCGTCTCGTTATGAGGCAATCGAAAACTTTGAAGATCTGTGCTAATCATCTT 432
Query 1737 CGTTAAATCGGGCATGAGTGTTCAGGAGCACGTTGGGAATGAAAAGTCATGTGTGTGGCA 1796
||| |||||| |||||||||||||| |||| ||||||||| ||||| ||||| |||||
Sbjct 433 -GTTGGATCGGGTATGAGTGTTCAGGAACACGCTGGGAATGATAAGTCTTGTGTATGGCA 491
Query 1797 CGCTCGTGACTTTGCT--GATGGTGAACTCAAGGATGAGCTTTTCTGTATCAGATTTGCT 1854
||||||||| ||| || ||||||||| | ||||||||||| ||||||||| | ||||||
Sbjct 492 CGCTCGTGA-TTT-CTCCGATGGTGAATTGAAGGATGAGCTCTTCTGTATCCGGTTTGCT 549
Query 1855 TCAATTGAGAATTGCAAAACATTTATGCAAAAGTTCAAGGAAGTTGCTGACTCTGAAGAA 1914
||| |||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 550 TCAGTTGAGAATTGCAAAGCATTTATGCAAAAGTTCAAGGAAGTAGCTGAATCTGAAGAA 609
Query 1915 GAGAAAGAAGAGAGCAAAGATGCCTCTGACACTGCTGGTCTTCTTGAGAAATTGACTGTG 1974
||||||||||||||||||||||||||||| || ||||||||||||||||| || || |||
Sbjct 610 GAGAAAGAAGAGAGCAAAGATGCCTCTGATACCGCTGGTCTTCTTGAGAAGTTAACAGTG 669
Query 1975 GAAGAGA 1981
|||||||
Sbjct 670 GAAGAGA 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105019540140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5