BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg334015

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07170.1 | Symbols:  | PHF5-like protein | chr1:2200134-2201...   492    1e-138
  AT1G07175.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   189    2e-47 


> AT1G07170.1 | Symbols:  | PHF5-like protein | chr1:2200134-2201146 
FORWARD LENGTH=595
Length=595

 Score =  492 bits (266),  Expect = 1e-138
 Identities = 290/302 (96%), Gaps = 0/302 (0%)
 Strand=Plus/Plus

Query  1    ATGGCCAAGCATCATCCTGATTTGATCATGTGCCGCAAACAACCTGGCATTGCTATTGGG  60
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  135  ATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAACAACCTGGCATTGCTATTGGG  194

Query  61   CGGTTATGCGAGAAATGCGATGGAAAATGCGTCATATGTGATTCCTATGTCCGCCCGTGT  120
            ||  | |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  195  CGACTGTGCGAGAAGTGTGATGGAAAATGCGTCATATGTGATTCCTATGTCCGCCCGTGT  254

Query  121  ACTCTGGTTCGGATTTGCGATGAATGCAACTATGGTTCGTTCCAAGGACGGTGTGTCATA  180
            ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  255  ACTCTGGTTAGGATTTGCGATGAATGCAACTATGGTTCGTTCCAAGGGCGGTGTGTCATA  314

Query  181  TGCGGAGGAGTTGGAATCTCAGATGCTTACTACTGCAAAGAGTGTACACAACAGGAGAAA  240
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  315  TGCGGAGGAGTTGGAATCTCGGATGCTTACTACTGCAAAGAGTGTACACAACAGGAGAAA  374

Query  241  GATAGAGATGGCTGTCCTAAGATTGTCAATCTTGGCAGTGCGAAAACTGATCTGTTCTAT  300
            ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  375  GATAGAGATGGTTGTCCTAAGATAGTCAATCTTGGCAGTGCCAAAACTGATCTGTTCTAT  434

Query  301  GA  302
            ||
Sbjct  435  GA  436


> AT1G07175.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G29995.1); Has 
30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr1:2202330-2202774 FORWARD LENGTH=268
Length=268

 Score =  189 bits (102),  Expect = 2e-47
 Identities = 143/162 (88%), Gaps = 6/162 (4%)
 Strand=Plus/Plus

Query  307  GTCTCTTCGGCTCGACTCACGTTCTCATTTTCAGAAAATGAAAAGATGATGATGGTGAAA  366
            ||||||||||||||||| || || |||||||||||||| | ||| | |||||||||||  
Sbjct  110  GTCTCTTCGGCTCGACTAACTTTTTCATTTTCAGAAAACG-AAA-A-GATGATGGTGAGG  166

Query  367  GGTAGATCATTGATGGTGAGCACCAACGACTACGACGGGCCATCGGCCAACGCCAGACAC  426
            |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct  167  GGTAGATCATTGATGGTGAGCACCAACGACTACGGCGAGCCATCGGCCAACGCCAAACAC  226

Query  427  AATCCACCAGGGAGGCGT-G-G-AGGAGGACGGAGAGGTTAA  465
            |||||||| || |||||| | | |||||| |||||||| |||
Sbjct  227  AATCCACCTGGAAGGCGTCGTGGAGGAGGTCGGAGAGGGTAA  268



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5