BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334030
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07340.1 | Symbols: ATSTP2, STP2 | sugar transporter 2 | chr... 2388 0.0
> AT1G07340.1 | Symbols: ATSTP2, STP2 | sugar transporter 2 | chr1:2254822-2256850
FORWARD LENGTH=1686
Length=1686
Score = 2388 bits (1293), Expect = 0.0
Identities = 1432/1500 (95%), Gaps = 6/1500 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTTGGTTCGATGAATGTCGAAGAAGGCACTAAAGCTTTTCCTGCAAAACTGACT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 52 ATGGCTGTTGGTTCGATGAATGTCGAAGAAGGCACTAAAGCTTTTCCTGCGAAGCTGACA 111
Query 61 TTTCAAGTCTTTCTTTGCTGTGTCATTGCTGCTGTTGGTGGTCTCATGTTTGGTTACGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 GGTCAAGTCTTTCTTTGCTGTGTCATTGCTGCTGTTGGTGGTCTCATGTTTGGTTACGAC 171
Query 121 ATCGGAATCTCAGGAGGTGTGACGAGTATGGACACTTTCTTGTTAGATTTTTTCCCACAC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 172 ATCGGAATCTCAGGAGGTGTAACGAGTATGGACACTTTCTTGTTAGATTTTTTCCCACAC 231
Query 181 GTGTACGAGAAGAAACACAGGGTACACGAAAACAACTACTGCAAATTCGATGACCAGCTC 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 232 GTGTACGAGAAGAAACACAGAGTACACGAAAACAACTACTGCAAATTCGATGACCAGCTC 291
Query 241 TTGCAGTTGTTCACTTCGTCACTCTACTTGGCTGGAATCTTTGCTAGCTTTATTGCTTCC 300
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 292 TTGCAGTTGTTCACTTCCTCACTCTACTTGGCTGGAATCTTCGCTAGCTTTATTTCTTCC 351
Query 301 TATGTTTCCAGGGCTTTTGGAAGAAAACCCACGATCAT-CTCCGCCTCCATCTTCTTCCT 359
|||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 352 TATGTTTCTAGGGCTTTTGGAAGAAAACCCACAATCATGCT-CGCCTCCATCTTCTTCCT 410
Query 360 CGTCGGGGCTATTCTCAACTTATCTGCCCAA-AACCTGGGCATGTTGATCGGTGGTCGTA 418
|||||| ||||| |||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 411 CGTCGGTGCTATCCTCAACTTATCTGCCCAAGAA-CTCGGCATGTTGATCGGTGGTCGTA 469
Query 419 TTCTTCTCGGCTTCGGTATCGGTTTCGGTAACCAGACCGTCCCATTGTTCATCTCAGAGA 478
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 470 TTCTTCTCGGCTTTGGTATCGGTTTCGGTAACCAGACCGTTCCATTGTTCATCTCAGAGA 529
Query 479 TTGCTCCGGCGAAATACAGAGGAGGACTAAACGTCATGTTCCAGTTTCTCATCACCATTG 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TTGCTCCGGCGAGATACAGAGGAGGACTAAACGTCATGTTCCAGTTTCTCATCACCATTG 589
Query 539 GAATCTTAGCAGCAAGTTATGTGAACTACTTAACTTCCACGTTGAAAAACGGCTGGAGAT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GAATCTTAGCAGCAAGTTATGTGAACTACTTAACTTCCACGTTGAAAAACGGCTGGAGAT 649
Query 599 ATTCTCTCGGTGGTGCAGCTGTCCCCGCTTTAATCCTCTTGATAGGATCCTTCTTTATCC 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ATTCTCTCGGTGGTGCTGCTGTCCCCGCTTTAATCCTCTTGATAGGATCCTTCTTTATCC 709
Query 659 ACGAGACTCCAGCTAGTCTCATCGAGCGCGGTAAAGACGAAAAAGGGAAGCAAGTCCTGA 718
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 710 ACGAGACTCCGGCTAGTCTCATCGAGCGCGGTAAAGACGAAAAGGGGAAGCAAGTCCTGA 769
Query 719 GAAAGATCAGAGGCGTTGAAGATATTGAGCTCGAGTTCAATGAGATCAAATACGCAACAG 778
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GGAAGATCAGAGGCATTGAAGATATTGAGCTCGAGTTCAATGAGATCAAATACGCAACAG 829
Query 779 AGGTTTCGACAAAAGTGAAAAGCCCATTCAAAGAACTCTTCACCAATCGTGAGAACAGAC 838
|||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 830 AGGTAGCGACAAAGGTGAAAAGCCCATTCAAAGAACTCTTCACCAAGAGTGAGAACAGAC 889
Query 839 CACCATTGGTGTGTGGAACGTTACTTCAGTTCTTTCAACAGTTCACCGGTATCAACGTTG 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 890 CACCATTGGTGTGTGGAACGTTACTTCAGTTCTTTCAACAGTTCACCGGTATCAACGTGG 949
Query 899 TTATGTTCTACGCTCCAGTTTTGTTCCAGACGATGGGTAGTGGTAACAACGCTTCTCTGA 958
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 950 TTATGTTCTACGCTCCAGTTTTGTTCCAGACGATGGGTAGTGGTGACAACGCTTCTCTGA 1009
Query 959 TCTCTACTGTTGTCACCAATGGTGTGAACGCAGTCGCAACAATTATCTCTCTTGTAATGG 1018
|||||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||
Sbjct 1010 TCTCTACTGTTGTCACCAATGGTGTGAACGCAATCGCTACAGTTATCTCTCTTTTAGTGG 1069
Query 1019 TTGATTTGGCCGGTAGAAAATGTCTTTTGGTCGAAGGAGCTATCCAGATGACCGCTACAC 1078
||||||| |||||||||| |||||| || | ||||||||| ||||||||||||||||||
Sbjct 1070 TTGATTTCGCCGGTAGAAGGTGTCTTCTGATGGAAGGAGCTCTCCAGATGACCGCTACAC 1129
Query 1079 AGATGACAATTGGAGGCATTCTCTTAGCTCACTTGAAACTGGTTGGTCCTATTACTGGCC 1138
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1130 AGATGACAATTGGAGGCATTCTCTTAGCTCACTTGAAGCTAGTTGGTCCTATTACTGGCC 1189
Query 1139 ATGCCGTGCCGCTGATTGTATTGGTCCTCATCTGCATATACGTGTCTGGATTTGCATGGT 1198
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1190 ATGCCGTGCCGCTGATTGTATTGATCCTCATCTGCGTATACGTGTCTGGATTTGCATGGT 1249
Query 1199 CTTGGGGACCATTGGGATGGCTTGTTCCGTCTGAGATCTATCCTCTTGAAGTGAGAAATG 1258
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1250 CTTGGGGTCCATTGGGATGGCTTGTTCCGTCTGAGATCTACCCTCTTGAAGTGAGAAATG 1309
Query 1259 CAGGTTACTTCTGTGCTGTAGCGATGAACATGGTCTGCACTTTCATCATTGGACAGTTCT 1318
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 CTGGTTACTTCTGTGCGGTGGCGATGAACATGGTCTGCACTTTCATCATTGGACAGTTCT 1369
Query 1319 TCTTGTCGGCTCTATGCAGATTCAGATCAT-ACTTGTTCTTCTTCTTCGGAGTAATGAAC 1377
||||||| ||||| |||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 1370 TCTTGTCTGCTCTCTGCAGATTCAGATCATTA-TTGTTCTTCTTCTTCGGAATAATGAAC 1428
Query 1378 ATTGCCATGGGACTATTTGTCGTGTATTATCTTCCCGAAACCAAAGGTGTTCCTGTTGAG 1437
||| |||||||||||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 1429 ATTATCATGGGACTATTTGTCGTGTTTTTTCTTCCCGAAACCAAAGGTGTTCCTATTGAG 1488
Query 1438 GAAATGGCCGAGAAGCGTTGGAAGACACACTCGCGTTGGAAGAAATATTTCAAAGACTAG 1497
||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 1489 GAAATGGCCGAGAAGCGTTGGAAAACGCACCCGCGTTGGAAGAAATATTTCAAAGACTAG 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5