BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg334057

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07690.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   195    4e-49


> AT1G07690.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: 
Orthoreovirus membrane fusion p10 (InterPro:IPR009854); 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT1G54950.1); Has 11 Blast hits to 11 proteins in 
4 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; 
Plants - 7; Viruses - 0; Other Eukaryotes - 2 (source: NCBI 
BLink). | chr1:2378076-2379000 FORWARD LENGTH=540
Length=540

 Score =  195 bits (105),  Expect = 4e-49
 Identities = 160/186 (86%), Gaps = 5/186 (3%)
 Strand=Plus/Plus

Query  1    ATGGCTTCTAATCTTGTACTCATCGTCCTCCTCGTATTTGTGTCTCTCTCTTTAACTTGT  60
            ||||||||||||||| | |||||||||||||||||| | ||||| ||||||||| ||| |
Sbjct  1    ATGGCTTCTAATCTTCTCCTCATCGTCCTCCTCGTACTCGTGTCCCTCTCTTTAGCTTCT  60

Query  61   GGATATTC-TCCTCGTACTTTGAGAGATGCTGTCTCAAAACAAGACGATGATTCATATGT  119
            |||||||| |  ||  ||   |||||||||||||||||||||||||||||| || ||| |
Sbjct  61   GGATATTCTTTTTC-CAC---GAGAGATGCTGTCTCAAAACAAGACGATGAATCCTATAT  116

Query  120  CATGGCTACGAGTGATCAAGAATCATCGATGGTCGTTGTTGAAGATATAGTAAAAGGTCG  179
             ||| |||||||||||||||| || || ||||||||| |||||||| |||||||||||||
Sbjct  117  TATGACTACGAGTGATCAAGATTCTTCAATGGTCGTTCTTGAAGATGTAGTAAAAGGTCG  176

Query  180  TCTTCT  185
            || |||
Sbjct  177  TCGTCT  182



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5