BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg334065

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11950.1 | Symbols:  | Protein of unknown function (DUF1191)...   494    4e-139


> AT4G11950.1 | Symbols:  | Protein of unknown function (DUF1191) 
| chr4:7173276-7174259 REVERSE LENGTH=984
Length=984

 Score =  494 bits (267),  Expect = 4e-139
 Identities = 337/371 (91%), Gaps = 3/371 (1%)
 Strand=Plus/Plus

Query  117  TGTCTGCTTGGGAACAAGACAAGGGCACTATGTGCTGGTGATTAGAGCTCATGATAGTAG  176
            ||| ||||||||||||||||||||||| || | ||| ||||||||||||||||||||| |
Sbjct  615  TGTTTGCTTGGGAACAAGACAAGGGCATTACGCGCTTGTGATTAGAGCTCATGATAGTGG  674

Query  177  TGGTCGTGGTAGTACGTTGGTAACGCCACCGTCATCTCCGGCGGTGAAGGACGGTGGCGG  236
             ||| | ||||||||| ||||||| ||  |||||||||||||  |||  |||||||||||
Sbjct  675  CGGTGGCGGTAGTACGGTGGTAACACCGTCGTCATCTCCGGCTTTGACTGACGGTGGCGG  734

Query  237  AGGGAAATTAAGCCGGTGGAAATTGGCGGTTGGAAATGTGATTGGGTCAATGATTGGAGC  296
            ||||||||| |||||||||||| |||||||||| | |||||| || ||||| ||||||||
Sbjct  735  AGGGAAATTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGATAGGTTCAATAATTGGAGC  794

Query  297  GTTTCTGTTACGGTTATTGGTGGTGGGGATGGTAGTgaaagggaagaagaaagcgatgag  356
            |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  795  GTTTCTGTTAGGGTTATTGGTGGTGGCGATGGTAGTGAAAGGGAAGAAGAAAGCGATGAG  854

Query  357  agaggagatggagaggagagcttatgaagaagaagCACTTTC-GGTTTCAATGGTGGGTC  415
            |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct  855  AGAGGAGATGGAGAGGAGAGCTTATGAAGAAGAAGCACTT-CAGGTTTCAATGGTGGGTC  913

Query  416  ATGTTAGAGCTAATCCTAATGCTTCAAGAACAAGAACGGTTCCAAGATTTGACAATACTA  475
            ||||||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||
Sbjct  914  ATGTTAGAGCTAATCCTAATGCTTCGAGATCAAGAACGATTCCAAGATTTGAAAATACTA  973

Query  476  GGTACA-GTAA  485
            |||| | ||||
Sbjct  974  GGTATAAGTAA  984


 Score =  152 bits (82),  Expect = 3e-36
 Identities = 102/112 (91%), Gaps = 0/112 (0%)
 Strand=Plus/Plus

Query  1    ATGGGCACGAAACAAAACTTTATTTTGATCAAGTTCTTAAGTAGCGTGGCTAGTGGGAGC  60
            ||||||||| ||||||||  |||||||||||| |||||||| || | ||| ||||| |||
Sbjct  463  ATGGGCACGGAACAAAACCCTATTTTGATCAAATTCTTAAGCAGTGAGGCAAGTGGTAGC  522

Query  61   CCTAAACCTAACACGAAGAAGAACTCATCTCTCTTGTGTGCTTGCTTCACAA  112
            |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  523  CCTAAACCTAACACGAAGAAGAACTCATCTGTCTTGTGTGCTTGCTTCACAA  574



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5