BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334084
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07970.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cytochrom... 3430 0.0
> AT1G07970.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cytochrome
B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast
hits to 213 proteins in 79 species: Archae - 0; Bacteria
- 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0;
Other Eukaryotes - 14 (source: NCBI BLink). | chr1:2469286-2472628
REVERSE LENGTH=2434
Length=2434
Score = 3430 bits (1857), Expect = 0.0
Identities = 2012/2085 (96%), Gaps = 18/2085 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCCGATGCGAGGAGTAAAATTAAC-TC-C-ACTCAAGGTTCGTCCCATTCTCCG 57
|||||||| |||| |||||| || |||||| | | ||||| |||||||||| |||||||
Sbjct 111 ATGGATTCTGATGTGAGGAGGAAGATTAACAACACTACTCAGGGTTCGTCCCCTTCTCCG 170
Query 58 AAGCCATCCAAGTTCTCTGTGTACCGGAACCCTGCTCTCGCCGCCGCTTCCACCGCCAAC 117
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AAGCCCTCCAAGTTCTCTGTGTACCGGAACCCTGCTCTCGCCGCCGCTTCCACCGCCAAC 230
Query 118 AGCCTCCGTCCCTCGAAATCCGTTCTTCTATTCATATTCTTGCTCTCTACCGCTTCCGCT 177
||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 231 AGCATCCGTCCTTCGAAATCCGTTCTTCTATTCATATTCTTGCTCTCTATCGCTTCCGCT 290
Query 178 TTCTCTCTCATCTCCTTCATGGCCGGGGAGAAATGGTTGACCAATGCTTTAACATTCGGG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TTCTCTCTCATCTCCTTCATGGCCGGGGAGAAATGGTTGACCAATGCTTTAACATTCGGG 350
Query 238 AAAATATCCCAAGAGGCAGCTTATGTCACTGTAAAGGCGTGGCAGGGGCTGGTGACTTTG 297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 351 AAAATATCCCAAGAGGCAGCTTATGTCACTGTAAAAGCGTGGCAGGGGCTGGTGACTTTG 410
Query 298 TTTTGTATTGGAGCAATGATGGCTTTGTCCAAAGGCATATCTCTGCACAGAGCAAAGTTT 357
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 411 TTTTGTATTGGAGCAATGATGGCTTTGTCCAAAGGCATATCTTTGCACAGAGCAAAGTTT 470
Query 358 GCTGCTCGAGGAGAAACTAAATCTTCCTCTAAAGAAACCAAAGATCAGTTTTCTCTATCA 417
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 471 GCTGCTCGAGGAGAAACTAAATCTTTCTCTAAAGAAACCAAAGATCAGTTTTCTTTATCA 530
Query 418 AATCGTCAGCTTGAACTTCTTGGGATAAAGAAAAAAGCTGACCAGAATGTATCAGATTTT 477
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 531 AATCGTCAGCTTGAACTTCTTGGGATAAAGAAAAAAGCTGACCAGAGTGTATCAGAATTT 590
Query 478 CCAAACAGTCGTCCTGCATCGAAACCTTCACAGTCATTGGAGCCGCTTGTCCCAATACAT 537
||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 591 CCAAAGAGTCGTCCTGCATTGAAACCTGCACAGTCATTGGAGCCGCTTGTCCCAATACAC 650
Query 538 CATCTAACTCTTACTGGTTCAGCTCATAAGTCTTCTGGTGGTGGTGATAAGCTGAATTCC 597
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CATCAAACTCTTACTGGTTCAGCTCATAAGTCTTCTGGTGGTGGTGATAAGCTGAATTCC 710
Query 598 CGTACA-GGAAACCAGATTAGTTCGTTTAGCACTCCCTCAAAACAAATGGGTTCACCGTC 656
|||| | |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 711 CGTA-ATGGAAGCCAGATTAGTTCATTTAGCACTCCCTCAAAACAAATGGGTTCACCGTC 769
Query 657 TATGTATCTTGTCCCTTCTAGCTCACCAGTTTCTTCTAATCATGC-TTCTTCTGGTCAGG 715
||||||||||||||||||||||||||||||||||||||| | | | ||| || |||||||
Sbjct 770 TATGTATCTTGTCCCTTCTAGCTCACCAGTTTCTTCTAACCGT-CTTTCGTCGGGTCAGG 828
Query 716 ATAAGGCTGTTTCTAGTCCTTGGTCTGGTAGACGAAGTTCTACAAAAGACATAGCTACCG 775
|||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 829 ATAAGGCTGTCTCTAGTCCTTGGTCTGGTAGACGAAGTTCTGCAAAAGACATAACTACCG 888
Query 776 AGGAGCAGCTTGAGCAGCTTTTGGCTGAAATAGATGAGCCAATCACTGAGTCGGCTGGGA 835
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 889 AGGAGCAGCTTGAGCAGCTTTTGGCAGAAATAGATGAGAAAATCACTGAGTCGGCTGGGA 948
Query 836 AGATGCGTACGCCTCCACCAACAGTTGGGAGTTTCGCCATGGCTAGCCCGAGTACAGTTG 895
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 949 AGATGCGTACGCCTCCACCAACAGTTGGGAGTTTTGCCATGGCTAGCCCGAGTACAGTTG 1008
Query 896 GT-GTTCAACTGGTGCATCTGGGACTAC-A-GAGTACACCACTAAGACCTGTCAGGATGT 952
|| |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 1009 GTGGTTCAACTGGTGCATCTGGGGCTACTAGGAGTACACCACTAAGACCTGTCAGGATGT 1068
Query 953 CTCCTGGTGCTCAGAAATTTACGACTCCCCCAAAGAAAGGAGAGGGTGATTTCCCCAACC 1012
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CTCCTGGCGCTCAGAAATTTACGACTCCCCCAAAGAAAGGAGAGGGTGATTTCCCCAACC 1128
Query 1013 CAATGTCCTTAG-AAGGTGCTATCGAAGGTTTTATTCATCTAGGTGTCTATCCTCAGATA 1071
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 CAATGTCCTTAGAAAGG-GCTATCGAAGGTTTTATTCATCTAGGTGTCTATCCTCAGATA 1187
Query 1072 GAAGACTGGCGTGACCGACTAAGGCAATGGTGTTCCTCCGTGTTGCTCAAACCTCTGCTT 1131
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1188 GAAGACTGGCGTGACCGACTAAGGCAATGGTGTTCCTCAGTGTTGCTCAAACCTCTGCTT 1247
Query 1132 AACAAGGTTGAAACCAGTCATATTCAGGTAATGCAAACGGCATCAAAGCTTGGTGTTAAT 1191
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1248 AACAAGGTTGAAACCAGTCATATTCAGGTAATGCAAACAGCATCAAAGCTTGGTGTTAAT 1307
Query 1192 GTCACAGTTAGTCAAGTTGGAAGTGATTTGCCAACAAATGGAACCGCTACAACTGCCTTA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GTCACAGTTAGTCAAGTTGGAAGTGATTTGCCAACAAATGGAACCGCTACAACTGCCTTA 1367
Query 1252 CCGGTTGATCGAACGAAGGGGTGGCAGCCATCTTACTCTCTCGATGAAGATGCTCTTCTT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 CCGGTTGATCGAACGAAGGGGTGGCAGCCATCTTACTCTCTCGATGAAGATGCTCTTCTT 1427
Query 1312 CATCAATTACGCGCTAATCTTGTACAGGCTATTGATGCTTCCATGCAAAAGCTGCGTACA 1371
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 CACCAATTACGCGCTAATCTTGTACAGGCTATTGATGCTTCCATGCAAAAGCTGCGTACA 1487
Query 1372 GAGAACCAGCAGTTTCAGCAACAGCAACAACAACAGCAA--GC--G-G-CACTAATCCCT 1425
||||||||||||||||||||||||||||||||||||||| || | | |||||||||||
Sbjct 1488 GAGAACCAGCAGTTTCAGCAACAGCAACAACAACAGCAACAGCAAGCGGCACTAATCCCT 1547
Query 1426 GTCATGCAGGAATGTGTTGATGCTATAAGTGAACATCGGAGGCTTCAGGGCTTAATGAAA 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 GTCATGCAGGAATGTGTTGATGCTATAAGTGAACATCGGAGGCTTCAGGGCTTAATGAAA 1607
Query 1486 GGAGAGTGGGTTAAGGGCCTACTTCCACGCAGCAGTATTCCAGCAGATTACACAGTGCAA 1545
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1608 GGAGAGTGGGTTAAGGGCCTACTTCCGCGCAGCAGTATTCCAGCAGATTACACAGTGCAA 1667
Query 1546 AGAATCCGAGCACTCGCGGAAGGAACTTGTGTGAAGAACTACGAATACAATGGAAGGGCA 1605
||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 1668 AGAATCCGAGCACTCGCGGAAGGAACTTGTGTGAAGAACTATGAGTACAATGGAGGGGCA 1727
Query 1606 GATACTCGTGAGAGAAACAAGAAATGGAGCCTGGAGCCTCCAACCGATTCTCATCTGCTT 1665
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 GATACTCGTGAGAAAAACAAGAAATGGAGCCTGGAGCCTCCAACCGATTCTCATCTGCTT 1787
Query 1666 CTGTACTTGTTTTGTGCCTTCTTGGAACACCCAAAGTGGATGTTGCATTTGGACCCTAGC 1725
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1788 CTGTACTTGTTTTGTGCCTTCTTGGAACACCCAAAGTGGATGTTACATTTGGACCCTAGC 1847
Query 1726 TCTTACACAGGGACTCAGGCAAGCAAGAACCCTTTATTCTTAGGGGTTTTGCCTCCAAAA 1785
||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1848 TCTTATACAGGGACTCAGGCGAGCAAGAACCCTTTATTCTTAGGGGTTCTGCCTCCAAAA 1907
Query 1786 GAGAGATTCCCAGAGAAGTACATTGCTGTGGTATCGGGTGTACCTTCGACACTACATCCT 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1908 GAGAGATTCCCAGAGAAGTACATTGCTGTGGTATCGGGTGTACCTTCGACACTTCATCCT 1967
Query 1846 GGTGCATGTGTGCTTGCGGTAGACAAGCAAAGCCCACCCACATTTGCCTTGTACTGGGAT 1905
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 GGTGCATGTGTGCTTGCAGTAGACAAGCAAAGCCCACCCACATTTGCCTTGTACTGGGAT 2027
Query 1906 AAGAAAGTGCAGTTTACTCTTCAGGGAAGAACAGCACTATGGGACTCTATGTTGTTGATA 1965
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2028 AAGAAAGTGCAGTTTACTCTTCAGGGAAGAACAGCGCTATGGGACTCTATGTTGTTGATA 2087
Query 1966 TGCCACAGAATCAAGGTGGGATACGGAGGTGTTGTTCGTGGGATGAATCTGGGTTCTTCA 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 TGCCACAGAATCAAGGTGGGATACGGAGGTGTTGTTCGTGGGATGAATCTGGGTTCTTCA 2147
Query 2026 GCACTTAACATCCTCCAAGTTGTTGATTCGGATACTGACGATTAA 2070
|| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 2148 GCCCTTAACATCCTCCAAGTTGTTGATTCCGACACTGACGATTAA 2192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102609913980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5