BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334085
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07980.1 | Symbols: NF-YC10 | nuclear factor Y, subunit C10 ... 568 4e-161
> AT1G07980.1 | Symbols: NF-YC10 | nuclear factor Y, subunit C10
| chr1:2473165-2474927 REVERSE LENGTH=996
Length=996
Score = 568 bits (307), Expect = 4e-161
Identities = 388/426 (91%), Gaps = 9/426 (2%)
Strand=Plus/Plus
Query 1 ATGGTGTCGTCAAAGAAACCCAAGGAGAAGAAGGCGAGGAGCGATGCCGTCGTCAATAAA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 18 ATGGTGTCGTCAAAGAAACCCAAGGAGAAGAAGGCGAGGAGCGATGTCGTCGTCAATAAA 77
Query 61 GCTG-GTGGCCGGAATACACGCAGCTCCGGTTCCA-AAGCGAGGAAGGCGACGAATAAGG 118
|| | |||| |||| || ||||||||||||||||| || ||| |||| || |||| ||||
Sbjct 78 GC-GAGTGGTCGGAGTAAACGCAGCTCCGGTTCCAGAA-CGAAGAAGACGTCGAACAAGG 135
Query 119 TCAACATTGTGAAGAAGGTGCCGGAGATTCACGAGATCTCAGAATCTTCGAGCAGTGACT 178
| ||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||
Sbjct 136 TTAACATTGTGAAGAAGAAGCCGGAGATTTACGAGATCTCAGAATCATCGAGCAGTGACT 195
Query 179 ATGTGGAAGAAGCAATAAGAGGTGATGCGGCGAAGAAAAGTAATGGCGTCGTGAGCAA-A 237
||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |
Sbjct 196 CTGTGGAAGAAGCAATAAGAGGCGATGAGGCGAAGAAAAGTAACGGCGTCGTGAGCAAGA 255
Query 238 GGCCGTAACGGAAAGAGTGGAGGAGTTCCGACGAAGACGAGTAAAAATCGGGAAGAGGAC 297
|| ||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||
Sbjct 256 GGG-GTAACGGAAAGAGTGTAGGAATTCCGACGAAGACGAGTAAAAATCGAGAAGAGGAC 314
Query 298 GACGGAGGTGTGGAAGATGCTAAGATGTTTAAGTTTCCGATGAATCGGATTCGGCGGATC 357
|| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 315 GATGGAGGCGCGGAAGATGCTAAGATC---AAGTTTCCGATGAATCGGATTCGGCGGATC 371
Query 358 ATGAGAATCGACAATTCCGCTCCACAGATTATGCAGGATGCTGTATTTCTTGTCAACAAA 417
||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 372 ATGAGAAGCGATAATTCTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAA 431
Query 418 GCCACG 423
||||||
Sbjct 432 GCCACG 437
Score = 348 bits (188), Expect = 5e-95
Identities = 198/203 (98%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 527 CGGAGATGTTCATTAAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCCAGGACAAAA 586
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 436 CGGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAGGACAAAA 495
Query 587 AGAAATTCATCCACTATAAACACCTCTCATCCGTAGTGAGTAACGACGAGAGATACGAGT 646
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 496 AGAAATTCATCCACTACAAACACCTCTCATCCGTAGTGAGTAACGACCAGAGATACGAGT 555
Query 647 TCCTTGCGGATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA 706
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TCCTTGCAGATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA 615
Query 707 GAGGCATGACAGATGCAGGCTGA 729
|||||||||||||||||||||||
Sbjct 616 GAGGCATGACAGATGCAGGCTGA 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5