BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334090
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08030.1 | Symbols: TPST | tyrosylprotein sulfotransferase |... 1230 0.0
> AT1G08030.1 | Symbols: TPST | tyrosylprotein sulfotransferase
| chr1:2489501-2493250 REVERSE LENGTH=1844
Length=1844
Score = 1230 bits (666), Expect = 0.0
Identities = 742/780 (95%), Gaps = 0/780 (0%)
Strand=Plus/Plus
Query 757 CAGATTGCAGGATTGACAAATAACTCCCATTTATCAGAAGCACATGAGATTCGGCATTGT 816
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 991 CAGATTGCAGGATTGACAAATAACTCCCATTTATCAGAAGCACACGAGGTTCGGCATTGT 1050
Query 817 GTGCAGAAGTTCAAAAGCCTTGGTGAGCCTGTTCTCCAAGTTGCCAAGAGGAGGCTGGAC 876
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1051 GTGCAGAAATTCAAAAGCCTTGGTGAGTCTGTTCTCCAAGTTGCCAAGAGGAGGCTAGAC 1110
Query 877 AACATGTTGTATGTTGGACTGACAGAGGAGCACAGGGAATCTGCATCACTTTTTGCCAAT 936
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGCATGTTGTATGTTGGACTGACAGAGGAGCACAGGGAATCTGCATCACTTTTTGCCAAT 1170
Query 937 GTAGTGGGTTCTCAAGTGCTGTCTCAAGTGGTTCCGTCCAATAAAACTGCGAAAACCAAA 996
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1171 GTAGTGGGTTCTCAAGTGCTGTCTCAAGTGGTTCCGTCCAATGCAACTGCGAAAATCAAA 1230
Query 997 ACCCTTAGATCAGAATCAAGTGTCACGATTTCAGAATCGGGGTCAGATAAGAGTAATATT 1056
| |||| ||||||| |||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 1231 GCTCTTAAATCAGAAGCAAGTGTCACAATTTCAGAAACCGGGTCAGATAAGAGTAATATT 1290
Query 1057 CAGAATGGTACATCTGAAGTTGCATTGAATAACACAGAAGCTAAGAGTGGAAATATGACG 1116
||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||
Sbjct 1291 CAGAATGGTACATCTGAAGTTACATTGAATAAGGCAGAAGCTAAGAGTGGGAATATGACG 1350
Query 1117 GTAAAAACCCTTATGGAAGTCTATGAAGGCTGCATCACTCATTTACGGAAGTCCCAAGGA 1176
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1351 GTAAAAACCCTTATGGAAGTCTATGAAGGCTGCATCACTCATTTACGAAAGTCCCAAGGA 1410
Query 1177 ACCAGACGGGTCAACTCTTTGAAGAGAATATCTCCAGCAAATTTTACCAGAGGGACACGT 1236
|||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||
Sbjct 1411 ACCAGACGGGTCAACTCTCTGAAGAGAATAACTCCAGCAAATTTTACAAGAGGGACGCGT 1470
Query 1237 ACAAGAGTTCCTAAAGAGGTCATTCAGCAGATCAAATCACTTAACAACCTCGATGTGGAG 1296
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1471 ACAAGAGTTCCTAAAGAGGTCATTCAGCAGATCAAATCGCTTAACAACCTCGATGTGGAG 1530
Query 1297 CTCTACAAGTATGCGAAAGAAATCTTTGCCAAAGAACATGAATTAGTGTCGAATAAGTTG 1356
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 CTCTACAAATATGCAAAAGTAATCTTTGCCAAAGAACATGAATTAGTGTCGAATAAGTTG 1590
Query 1357 ATATCAACTTCTAAGAGAAGCATTGTTGATCTGCCGAGTGAGTTAAAGAGCGTTTTCGGA 1416
|| |||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1591 ATCTCAAGTTCTAAGAGAAGCATTGTTGATCTGCCGAGTGAGTTAAAGAGCGTATTGGGA 1650
Query 1417 GAAATGGGTGAAGAGAAGCTATGGAAGTTCGTACCAGTGGCCTTGATGCTTTTATTGATC 1476
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1651 GAAATGGGTGAAGAGAAGCTATGGAAGTTCGTACCAGTGGCATTGATGCTTTTATTGATC 1710
Query 1477 TTCCTCTTCTTTCTATTTGTAAACGCTAGAAGAAGAAGAACCTCTAAAGTTAAGATTTGA 1536
||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||
Sbjct 1711 GTCCTCTTCTTTCTATTTGTAAACGCTAAAAGGAGAAGAACCTCCAAAGTTAAGATTTGA 1770
Score = 1133 bits (613), Expect = 0.0
Identities = 692/730 (95%), Gaps = 6/730 (1%)
Strand=Plus/Plus
Query 1 ATGCAAATGAATC-CTATTTGGAGGCTGGCTCTTGGGTTATTACTTCTTGGCTCAGTTAT 59
||||||||||| | || |||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 268 ATGCAAATGAA-CTCTGTTTGGAAGCTGTCTCTTGGGTTATTACTTCTTAGCTCAGTTAT 326
Query 60 TGGCTCTTTTGCGGAACTTGACTTTGGTCATTGCGAAAGACTTGTGAAAAGTTGGGCTGA 119
||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||
Sbjct 327 TGGCTCTTTTGCGGAACTTGATTTTGGCCATTGCGAAACTCTTGTGAAAAAATGGGCTGA 386
Query 120 TTCTTCTTCATCTCGTGAAGAACATGTCAACAAAGACAAACGCTCGCTTCAGGATTTGCT 179
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 387 TTCTTCTTCATCTCGTGAAGAACATGTTAATAAAGACAAACGCTCGCTTAAGGATTTGCT 446
Query 180 CTTCTTTCTCCATGTTCCCCGAACTGGAGGCAGGACATATTTTCATTGTTTCTTGAGGAA 239
|||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 447 CTTCTTTCTCCACGTTCCGCGAACTGGAGGCAGAACATATTTTCATTGTTTTTTGAGGAA 506
Query 240 GTTGTATGATAGCTCTGAGGAATGTCCTCGATCTTACGACAGGCTCCACTTCAATCCAAG 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 507 GTTGTATGATAGCTCTGAGGAATGTCCTCGATCTTACGACAAGCTCCACTTCAATCCAAG 566
Query 300 GAAAGAAAAGTGCAAGTTGTTGGCCACACATGATGATTATAGTTTGATGGCAAAGCTTCC 359
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 567 GAAGGAAAAGTGCAAGTTGTTAGCCACACATGATGATTATAGTTTGATGGCAAAGCTTCC 626
Query 360 GAGGGAGAGAACTTCGGTGATGACAATAGTTCGGGATCCTATTGCGCGAGTGTTAAGCAC 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 627 GAGGGAGAGAACTTCGGTGATGACAATAGTTCGGGATCCTATTGCGCGTGTGTTAAGCAC 686
Query 420 TTATGAATTTTCAGTAGAGGTAGCAGCTAGGTTTCTGGTGCATCCCAATTTAACTTCTGC 479
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 687 TTATGAATTTTCCGTAGAGGTAGCAGCTAGGTTTTTGGTGCATCCCAATTTAACTTCTGC 746
Query 480 GTCAAGGATGTCTAGCCGCATACGCAAGAGTAATGTAATAAGCACGCTAGACATATGGCC 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 747 GTCAAGGATGTCTAGCCGCATACGCAAGAGTAATGTAATAAGCACACTAGACATATGGCC 806
Query 540 ATGGAAATACCTAGTTCCATGGATGAGAGAAGACCTGTTTGCTCGGCGAGATGCACGGAA 599
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 807 ATGGAAATACCTAGTTCCATGGATGAGAGAAGACTTGTTTGCTCGGCGAGATGCACGAAA 866
Query 600 AGTT-AAGG-GCGTAGTTATCATAGAGGATGATAACCCATATGACATGGAGGAGATGCTT 657
| || |||| | ||||| ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 867 A-TTGAAGGAG-GTAGTGATCATTGAGGACGATAACCCGTATGACATGGAGGAGATGCTT 924
Query 658 ATGCCTTTGCACAAATATCTTGATGCGCCTACTGCTCATGACATAATCCACAATGGAGCG 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 925 ATGCCTTTGCACAAATATCTTGATGCGCCTACTGCTCATGACATCATCCACAATGGAGCG 984
Query 718 ACATTTCAGA 727
|| |||||||
Sbjct 985 ACTTTTCAGA 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75802822950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5