BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334097
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08080.1 | Symbols: ATACA7, ACA7 | alpha carbonic anhydrase ... 1291 0.0
> AT1G08080.1 | Symbols: ATACA7, ACA7 | alpha carbonic anhydrase
7 | chr1:2516991-2518546 REVERSE LENGTH=859
Length=859
Score = 1291 bits (699), Expect = 0.0
Identities = 787/830 (95%), Gaps = 4/830 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAACTACTCATCAATCCAG-TGCATCTTCTTTGTGGCTCTGTTCAGTATGTTCGC 59
|||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||| |
Sbjct 1 ATGGTGAACTACTCATCAAT-CAGTTGCATCTTCTTTGTGGCTCTGTTTAGTATTTTCAC 59
Query 60 AATTGTTTCGATTTCGAGTGCTGCTTCAAGTCATGGAGAAGTTGAGGACGAACACGAGTT 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 60 AATTGTTTCGATTTCGAGTGCTGCTTCAAGTCACGGAGAAGTTGAGGACGAACGCGAGTT 119
Query 120 TAACTACAAGAAGAACGATGAGAAGGGGCCAGAGAGATGGGGAAAACTTAAACCGGAGTG 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 120 TAACTACAAGAAGAACGATGAGAAGGGGCCAGAGAGATGGGGAGAACTTAAACCGGAATG 179
Query 180 GGAAATGTGTGGAAAAGGAGAGATTCAATCTCCCATAGATCTTATGAATGAGAGAGTTAA 239
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 180 GGAAATGTGTGGAAAAGGAGAGATGCAATCTCCCATAGATCTTATGAACGAGAGAGTTAA 239
Query 240 CGTTGTTTCTCATCTTGGAAGGCTTAATAGAGACTATAAACCTGCAAATGCCACTCTTAA 299
| ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct 240 CATTGTTTCTCATCTTGGAAGGCTTAATAGAGACTATAATCCTTCAAATGCAACTCTTAA 299
Query 300 GAACAGAGGCCATGACATCATGTTAAAATTTGAAGATGGAGCCGGAAGTATTAAGATCAA 359
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 300 GAACAGAGGCCATGACATCATGTTAAAATTTGAAGATGGAGCAGGAACTATTAAGATCAA 359
Query 360 TGGTTTTCG-ATATGAACTTCAACAGCTTCATTGGCACTCTCCCTCTGAGCATACTATTA 418
||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 360 TGGTTTT-GAATATGAACTTCAACAGCTTCACTGGCACTCTCCGTCTGAACATACTATTA 418
Query 419 ATGGAAGAAGGTTTGCACTTGAGCTTCATATGGTTCACGAAGGCAAGAAGGGAAGAATGG 478
||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct 419 ATGGAAGAAGGTTTGCACTTGAGCTGCATATGGTTCACGAAGGCAGGAATAGAAGAATGG 478
Query 479 CTGTTGTGACTGTGTTGTACAAGATTGGAAGAGCAGATACTTTTATCAGATCGTTGGAGA 538
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 479 CTGTTGTGACTGTGTTGTACAAGATCGGAAGAGCAGATACTTTTATCAGATCGTTGGAGA 538
Query 539 ATGATTTAGAGGCCATTGCTGAAATGGAGGAGGCAGAGAAAAATGTAGGAATGATTGATC 598
| || ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 AAGAATTAGAGGGCATTGCTGAAATGGAGGAGGCTGAGAAAAATGTAGGAATGATTGATC 598
Query 599 CCACAAAAATTAAGATCGGAAGCAGAAAATATTACAGATACACTGGTTCACTTACCACTC 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCACCAAAATTAAGATCGGAAGCAGAAAATATTACAGATACACTGGTTCACTTACCACTC 658
Query 659 CTCCTTGCACTCAAAACGTTACCTGGAGCGTCGTTAGAAAGGTTAGGACCGTGACAAGAA 718
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCCTTGCACTCAAAACGTTACTTGGAGCGTCGTTAGAAAGGTTAGGACCGTGACAAGAA 718
Query 719 AACAAGTGAAACTTCTCCGCGTGGCTGTACACGATGATGCTGATTCGAATGCCAGGCCGG 778
|||||||||| || ||||||||||| || |||||||||||| |||||||||| |||||||
Sbjct 719 AACAAGTGAAGCTCCTCCGCGTGGCAGTGCACGATGATGCTAATTCGAATGCGAGGCCGG 778
Query 779 TCCAACCAACCAACAAGCGTATGGTGCACTTATATAGACCAATAGTTTAA 828
| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 779 TTCAACCAACCAACAAGCGCATAGTGCACTTATACAGACCAATAGTTTAA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5