BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334098
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08090.1 | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, AT... 2499 0.0
AT1G08100.1 | Symbols: ATNRT2.2, ACH2, NRT2;2AT, NRT2.2 | nitra... 1977 0.0
> AT1G08090.1 | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1,
ATNRT2.1, NRT2.1, NRT2:1 | nitrate transporter 2:1 | chr1:2524076-2526164
FORWARD LENGTH=1900
Length=1900
Score = 2499 bits (1353), Expect = 0.0
Identities = 1515/1595 (95%), Gaps = 4/1595 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGATTCTACTGGTGAGCCGGGAAGCTCCATGCATGGAGTTACCGGTAGAGAACAG 60
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 64 ATGGGTGATTCTACTGGTGAGCCGGGGAGCTCCATGCATGGAGTCACCGGTAGAGAACAA 123
Query 61 AGCTTTGCTTTCTCGGTGCAATCACCAATTGTGCATACCGACAAGACTGCCAAGTTCGAC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 124 AGCTTTGCTTTCTCGGTGCAATCACCAATTGTGCATACCGACAAGACGGCCAAGTTCGAC 183
Query 121 CTTCCGGTGGACACAGAGCACAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 184 CTTCCGGTGGACACAGAGCATAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCT 243
Query 181 CACATGAGAACGTTCCATCTCTCGTGGATCTCTTTCTCCACATGTTTTGTCTCGACGTTC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 244 CACATGAGAACGTTCCATCTCTCGTGGATCTCTTTCTCCACATGTTTTGTCTCGACTTTC 303
Query 241 GCAGCTGCACCACTTGTCCCAATCATCCGGGAGAATCTCAACCTCACCAAACAAGACATC 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCAGCTGCACCACTTGTCCCTATCATCCGGGAGAATCTCAACCTCACCAAACAAGACATT 363
Query 301 GGAAACGCTGGAGTTGCCTCAGTCTCGGGGAGTATCTTCTCTAGGCTGGTGATGGGAGCC 360
|||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 364 GGAAACGCCGGAGTTGCCTCTGTCTCTGGGAGTATCTTCTCTAGGCTCGTGATGGGAGCC 423
Query 361 GTGTGTGATCTTTTGGGTCCCCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCGCCA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 424 GTGTGTGATCTTTTGGGTCCCCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCCCCA 483
Query 421 ACGGTGTTCTCCATGAGCTTCGTGAGTGGA-GCCGCAGGCTTCATAACAGTGAGGTTCAT 479
|||||||||||||||||||||||||||| | || |||||||||||||| |||||||||||
Sbjct 484 ACGGTGTTCTCCATGAGCTTCGTGAGTG-ACGCAGCAGGCTTCATAACGGTGAGGTTCAT 542
Query 480 GATTGGTTTTTGCCTGGCGACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GATTGGTTTTTGCCTGGCGACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAA 602
Query 540 CAGTCAGATCATCGGTCTGGTGAACGGGACAGCCGCCGGATGGGGAAACATGGGTGGTGG 599
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 603 CAGTCAGATCATTGGTCTGGTGAATGGGACAGCAGCCGGATGGGGAAACATGGGTGGCGG 662
Query 600 CATAACGCAGCTGCTCATGCCCATTGTGTATGAAATCATTAGGCGTTGCGGTTCAACAGC 659
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 663 CATAACGCAGTTGCTCATGCCCATTGTGTATGAAATCATTAGGCGCTGCGGTTCCACAGC 722
Query 660 GTTCACGGCCTGGAGGATCGCCTTCTTTATCCCCGGTTGGTTGCACATCATCATGGGAAT 719
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 723 CTTCACGGCCTGGAGGATCGCCTTCTTTGTACCCGGTTGGTTGCACATCATCATGGGAAT 782
Query 720 CTTGGTTCTCACGCTAGGTCAAGATTTGCCAGATGGCAACCGAGCTGCCTTGGAGAAAAC 779
|||||| |||| |||||||||||| |||||||||| || |||||| ||||||||||| |
Sbjct 783 CTTGGTGCTCAATCTAGGTCAAGATCTGCCAGATGGAAATCGAGCTACCTTGGAGAAAGC 842
Query 780 GGGAGAAGTTGCCAAAGACAAATTCGGAAAGATTATGTGGTATGCCGTTACAAACTACAG 839
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 843 GGGAGAAGTTGCCAAAGACAAATTCGGAAAGATTCTGTGGTATGCCGTTACAAACTACAG 902
Query 840 GACTTGGATCTTCGTTCTTCTCTATGGATACTCCATGGGAGTTGAGTTGAGCACTGACAA 899
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 903 GACTTGGATCTTCGTTCTTCTCTACGGATACTCCATGGGAGTTGAGTTGAGCACTGATAA 962
Query 900 TGTTATCGCCGAGTACTTCTTTGACAGGTTTCACTTGAAGCTCCACACAGCCGGGCTCAT 959
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 963 TGTTATCGCCGAGTACTTCTTTGACAGGTTTCACTTGAAGCTCCACACAGCAGGGCTCAT 1022
Query 960 AGCAGCATGTTTCGGAATGGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTACGCGTCTGA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1023 AGCAGCATGTTTCGGAATGGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTACGCATCTGA 1082
Query 1020 CTTTGCCGCCAAGTACTTCGGGATGAGAGGGAGGTTGTGGACGTTGTGGATCATTCAGAC 1079
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1083 CTTTGCAGCCAAGTACTTCGGGATGAGAGGGAGGTTGTGGACGTTGTGGATCATACAGAC 1142
Query 1080 GGCTGGTGGTCTTTTCTGTGTGTGGCTCGGCCGCGCCAACACCCTCGTAACTGCTGTTGT 1139
||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1143 GGCTGGTGGCCTCTTCTGTGTGTGGCTCGGCCGCGCCAACACCCTTGTAACTGCCGTTGT 1202
Query 1140 AGCTATGGTCCTCTTCTCTTTAGGAGCCCAAGCCGCTTGCGGAGCCACCTTTGCAATTGT 1199
|||||||| ||||||||| | || || ||||| ||||||||||||||||||||||||||
Sbjct 1203 GGCTATGGTGCTCTTCTCTATGGGGGCACAAGCTGCTTGCGGAGCCACCTTTGCAATTGT 1262
Query 1200 GCCTTTTGTCTCCCGGCGAGCTCTAGGCATCATCTCGGGTTTAACTGGGGCTGGAGGAAA 1259
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1263 GCCCTTTGTCTCCCGGCGAGCTCTAGGCATCATCTCGGGTTTAACCGGGGCTGGAGGGAA 1322
Query 1260 CTTTGGATCAGGGCTCACACAACTCATCTTCTTCTCGACCTCACACTTCACAACTGAAGA 1319
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1323 CTTTGGATCAGGGCTCACACAACTCCTCTTCTTCTCGACCTCACACTTCACAACTGAACA 1382
Query 1320 AGGGCTAACATGGATGGGAGTGATGATAGTCGCTTGCACGTTGCCTGTGACCTTAATCCA 1379
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 1383 AGGGCTAACGTGGATGGGAGTGATGATAGTCGCTTGCACGTTACCTGTGACCTTAGTTCA 1442
Query 1380 CTTTCCTCAGTGGGGAAGCATGTTCTTGCCTCCGTCCAAAGATCCAGTCAAAGGTACGGA 1439
||||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||| ||
Sbjct 1443 CTTTCCTCAATGGGGAAGCATGTTCTTGCCTCCTTCCACAGATCCAGTGAAAGGTACAGA 1502
Query 1440 GGAGCACTACTATGGTTCTGAGTGGAATGAACAAGAGAAAG-AGAGGAACATGCATCAAG 1498
|| || || |||||||||||||||||||| || ||||| | ||| ||||||||||||||
Sbjct 1503 GGCTCATTATTATGGTTCTGAGTGGAATGAGCAGGAGAA-GCAGAAGAACATGCATCAAG 1561
Query 1499 GAAGCCTCCGGTTTGCCGAGAACGCCAAGTCCGAGGGTGGCCGCCGCGTCCGCTCTGCTG 1558
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1562 GAAGCCTCCGGTTTGCCGAGAACGCCAAGTCAGAGGGTGGACGCCGCGTCCGCTCTGCTG 1621
Query 1559 CTACGCCACCTGAGAACACACCCAACAATGCTTGA 1593
||||||| |||||||||||||||||||||| ||||
Sbjct 1622 CTACGCCGCCTGAGAACACACCCAACAATGTTTGA 1656
> AT1G08100.1 | Symbols: ATNRT2.2, ACH2, NRT2;2AT, NRT2.2 | nitrate
transporter 2.2 | chr1:2527170-2529120 REVERSE LENGTH=1709
Length=1709
Score = 1977 bits (1070), Expect = 0.0
Identities = 1316/1436 (92%), Gaps = 11/1436 (1%)
Strand=Plus/Plus
Query 9 TTCTACTGGTGAGCCGGGAAGCTCCATGCATGGAGTTACCGGTAGAGAACAGAGCTTTGC 68
|||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 48 TTCTACTGATGAGCCCGGAAGTTCCATGCATGGAGTTACCGGTAGAGAACAGAGCTATGC 107
Query 69 TTTCTCGGTGCA-ATCACCAATTGTGCATACCGACAAGACTG-CCAAGTTCGACCTTCCG 126
||||||||| | || | || || ||| || | | | |||| | | || |||
Sbjct 108 TTTCTCGGT--AGAT--GGTAGTGAGCCGACCAAC-ACAAAGAAAAAGTACAATCTGCCG 162
Query 127 GTGGACACAGAGCACAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCTCACATG 186
|||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GTGGACGCGGAGGATAAGGCAACGGTTTTCAAGCTCTTCTCCTTCGCCAAACCTCACATG 222
Query 187 AGAACGTTCCATCTCTCGTGGATCTCTTTCTCCACATGTTTTGTCTCGACGTTCGCAGCT 246
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 223 AGAACGTTCCACCTCTCGTGGATCTCTTTCTCCACATGTTTTGTTTCGACGTTCGCAGCT 282
Query 247 GCACCACTTGTCCCAATCATCCGGGAGAATCTCAACCTCACCAAACAAGACATCGGAAAC 306
||||||||| |||| |||||| |||||||||| |||||||||||||| ||||| ||||||
Sbjct 283 GCACCACTTATCCCGATCATCAGGGAGAATCTTAACCTCACCAAACATGACATTGGAAAC 342
Query 307 GCTGGAGTTGCCTCAGTCTCGGGGAGTATCTTCTCTAGGCTGGTGATGGGAGCCGTGTGT 366
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 343 GCTGGAGTTGCCTCCGTCTCGGGGAGTATCTTCTCTAGGCTCGTGATGGGAGCCGTGTGT 402
Query 367 GATCTTTTGGGTCCCCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCGCCAACGGTG 426
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 403 GATCTTTTGGGTCCTCGTTACGGTTGTGCCTTCCTTGTGATGTTGTCTGCCCCAACGGTG 462
Query 427 TTCTCCATGAGCTTCGTGAGTGGA-GCCGCAGGCTTCATAACAGTGAGGTTCATGATTGG 485
||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||
Sbjct 463 TTCTCCATGAGCTTCGTGAGT-GACGCAGCAGGCTTCATAACGGTGAGGTTCATGATTGG 521
Query 486 TTTTTGCCTGGCGACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAACAGTCA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TTTTTGCCTGGCGACGTTTGTGTCTTGTCAATACTGGATGAGCACTATGTTCAACAGTCA 581
Query 546 GATCATCGGTCTGGTGAACGGGACAGCCGCCGGATGGGGAAACATGGGTGGTGGCATAAC 605
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 582 GATCATCGGTCTGGTGAACGGGACAGCAGCCGGATGGGGAAACATGGGTGGCGGCATAAC 641
Query 606 GCAGCTGCTCATGCCCATTGTGTATGAAATCATTAGGCGTTGCGGTTCAACAGCGTTCAC 665
|||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 642 GCAGTTGCTCATGCCCATTGTGTATGAAATCATTAGGCGCTGCGGATCAACAGCGTTCAC 701
Query 666 GGCCTGGAGGATCGCCTTCTTTATCCCCGGTTGGTTGCACATCATCATGGGAATCTTGGT 725
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 702 GGCCTGGAGGATCGCCTTCTTTGTCCCCGGTTGGTTGCACATCATCATGGGAATCTTGGT 761
Query 726 TCTCACGCTAGGTCAAGATTTGCCAGATGGCAACCGAGCTGCCTTGGAGAAAACGGGAGA 785
|||||||||||||||||| |||||| ||| ||| |||||||| |||||||| |||||||
Sbjct 762 GCTCACGCTAGGTCAAGATCTGCCAGGTGGAAACAGAGCTGCCATGGAGAAAGCGGGAGA 821
Query 786 AGTTGCCAAAGACAAATTCGGAAAGATTATGTGGTATGCCGTTACAAACTACAGGACTTG 845
|||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||
Sbjct 822 AGTTGCCAAAGACAAATTCGGAAAGATTCTATGGTACGCCGTTACAAATTACAGGACTTG 881
Query 846 GATCTTCGTTCTTCTCTATGGATACTCCATGGGAGTTGAGTTGAGCACTGACAATGTTAT 905
||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 882 GATTTTCGTTCTTCTGTATGGATATTCCATGGGAGTTGAGTTAAGCACAGACAATGTTAT 941
Query 906 CGCCGAGTACTTCTTTGACAGGTTTCACTTGAAGCTCCACACAGCCGGGCTCATAGCAGC 965
|||||||||||||||||| ||||||||||||||||| |||||||| ||| | ||||||||
Sbjct 942 CGCCGAGTACTTCTTTGATAGGTTTCACTTGAAGCTTCACACAGCGGGGATTATAGCAGC 1001
Query 966 ATGTTTCGGAATGGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTACGCGTCTGACTTTGC 1025
|||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1002 ATGTTTCGGAATGGCCAATTTCTTTGCTCGTCCAGCAGGAGGCTGGGCATCTGACATTGC 1061
Query 1026 CGCCAAGTACTTCGGGATGAGAGGGAGGTTGTGGACGTTGTGGATCATTCAGACGGCTGG 1085
|||||| |||||| ||| |||||||||||||||| |||||||||||||||||| | ||
Sbjct 1062 AGCCAAGCGCTTCGGAATGCGAGGGAGGTTGTGGACTTTGTGGATCATTCAGACGTCCGG 1121
Query 1086 TGGTCT-TTTCTGTGTGTGGCTCGGCCGCGCCAACACCCTCGTAACTGCTGTTGTAGCTA 1144
|||||| ||| |||||||||||||| || |||||||||||||| ||||| |||||| |||
Sbjct 1122 TGGTCTCTTT-TGTGTGTGGCTCGGACGTGCCAACACCCTCGTCACTGCCGTTGTATCTA 1180
Query 1145 TGGTCCTCTTCTCTTTAGGAGCCCAAGCCGCTTGCGGAGCCACCTTTGCAATTGTGCCTT 1204
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 1181 TGGTCCTCTTCTCTTTAGGAGCACAAGCCGCTTGCGGAGCCACCTTTGCTATCGTGCCCT 1240
Query 1205 TTGTCTCCCGGCGAGCTCTAGGCATCATCTCGGGTTTAACTGGGGCTGGAGGAAACTTTG 1264
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1241 TTGTCTCCCGGCGAGCTCTAGGCATTATCTCGGGTTTAACCGGGGCTGGAGGGAACTTTG 1300
Query 1265 GATCAGGGCTCACACAACTCATCTTCTTCTCGACCTCACACTTCACAACTGAAGAAGGGC 1324
| ||||| |||||||| ||| |||| |||||||| || | ||||||||||||||||||||
Sbjct 1301 GGTCAGGACTCACACAGCTCGTCTTTTTCTCGACTTCGCGCTTCACAACTGAAGAAGGGC 1360
Query 1325 TAACATGGATGGGAGTGATGATAGTCGCTTGCACGTTGCCTGTGACCTTAATCCACTTTC 1384
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1361 TAACGTGGATGGGAGTGATGATAGTTGCTTGCACGTTGCCTGTTACCTTAATCCACTTTC 1420
Query 1385 CTCAGTGGGGAAGCATGTTCTTGCCTCCGTCCAAAGATCCAGTCAAAGGTACGGAG 1440
|||||||||||||||||||||| ||||| ||||| ||| | ||| | | |||||||
Sbjct 1421 CTCAGTGGGGAAGCATGTTCTTCCCTCCTTCCAACGATTCGGTCGACGCTACGGAG 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5