BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334100
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08110.4 | Symbols: | lactoylglutathione lyase family prote... 1164 0.0
> AT1G08110.4 | Symbols: | lactoylglutathione lyase family protein
/ glyoxalase I family protein | chr1:2535370-2537931 FORWARD
LENGTH=1102
Length=1102
Score = 1164 bits (630), Expect = 0.0
Identities = 682/708 (96%), Gaps = 0/708 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTCGTACTCAATAGCAATTGCTATATCTCGCATATCACCTCTAATTCGTTTCGTT 60
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 94 ATGAGTTCGTACTCAATAGCAAGTGCTATATCTCGCATATCACCTCTAATTCGTTTCGTT 153
Query 61 AAACCTTATTCCACCGGTTTTTCTTTCATCACTTGCCCTTGCAACAGTACCCGGAGGCCA 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 154 AAACCTTATTCCACCGGTTTTTCTTTCATCACTTGCGCTTGCAACAGTACCCGGAGGCCA 213
Query 121 AAGAGATTTGATCAGCTTCGTGTGTTCTCGATGGCATCGGAAGCGAGGGAATCACCAGCT 180
|||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||
Sbjct 214 AAGAGATTTGATCAGCTTTGTGTGTTTTCCATGGCGTCGGAAGCGAGGGAATCACCAGCA 273
Query 181 AACAATCCTGGCTTGTCAACGGTTAGGGATGAGGCTACAAAAGGATATATCATGCAGCAG 240
||||||||||||||||||||| | | |||||||||||||||||||| |||||||| |||
Sbjct 274 AACAATCCTGGCTTGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAG 333
Query 241 ACTATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGCGTGCTGGGG 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 334 ACTATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTGCTGGGG 393
Query 301 ATGTCATTGCTGAAGAGGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 ATGTCATTGCTGAAGAGGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGC 453
Query 361 TACGAGGATACTACAACAGCTCCAGCCGATCCAACAGAGAGAACGGTTTGGACCTTTGGT 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 454 TACGAGGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTTGGT 513
Query 421 CGACCGGCAACGATTGAATTGACTCACAACTGGGGTACGGAGAGTGATCCTAAGTTTAAA 480
| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 514 CAACCGGCAACAATTGAATTGACTCACAACTGGGGTACAGAGAGTGATCCTGAGTTTAAA 573
Query 481 GGATATCACAATGGGAACTCTGAGCCTTGTGGATTTGGGCACATTGGGGTTACCGTTGAT 540
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 574 GGTTATCACAATGGGAACTCTGAGCCTCGTGGATTTGGGCACATTGGGGTTACCGTTGAT 633
Query 541 GATGTGCACAAGGCATGCGAGAGATTTGAAGAATTGGGAGTAGAGTTTGTCAAGAAACCA 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 634 GATGTGCACAAGGCATGCGAGAGATTTGAAGAATTGGGAGTAGAGTTTGCCAAGAAACCA 693
Query 601 AACGATGGAAAGATGAAGAATATAGCTTTCATTAAGGATCCTGATGGCTACTGGATCGAG 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 694 AACGATGGAAAGATGAAGAATATAGCCTTCATTAAGGATCCTGATGGCTACTGGATCGAG 753
Query 661 ATCTTTGATCTCAAGACTATCGGGACTACTACCGTAAACGCAGCTTGA 708
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 754 ATCTTTGATCTCAAGACTATCGGAACTACTACCGTAAACGCAGCTTGA 801
Score = 76.8 bits (41), Expect = 3e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 665 TTGATCTCAAGACTATCGGGACTACTACCGTAAACGCAGCTTGA 708
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct 838 TTGATCTCAAGACTATCGGGACTACTACCGGAAACGCAGCTTGA 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5