BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334119
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08290.1 | Symbols: WIP3 | WIP domain protein 3 | chr1:26099... 1319 0.0
AT3G57670.1 | Symbols: NTT, WIP2 | C2H2-type zinc finger family... 200 2e-50
> AT1G08290.1 | Symbols: WIP3 | WIP domain protein 3 | chr1:2609996-2613242
REVERSE LENGTH=1760
Length=1760
Score = 1319 bits (714), Expect = 0.0
Identities = 790/826 (96%), Gaps = 8/826 (1%)
Strand=Plus/Plus
Query 169 GAACCACTCAACACGTCTATTCAATGCTTGCCTCTTCTAAACAAGCTCATGGAAAATAAG 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 258 GAACCACTCAACACGTCTATTCAATGCTTGCCTCTTCTAAACAAGCTCATGGAAAAT-A- 315
Query 229 AGTCGTCAAGCCTTGGATGATATTAAAGAAGAGAATAAGGATGATGTGGTTACTCTCCAA 288
| | |||||||| | | ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 316 A-TAGTCAAGCC-TCG--GATATCAAAGAAGAGAATAAGGATGATGTGGTTACCCTCCAA 371
Query 289 ATCGGATTTCCTAAATATCACCGTGGTAGCTCGGATGATGACTCTGATACAACTTTCGAT 348
||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||
Sbjct 372 ATCGGATTTCCTAAATACCACCGTGGTAGCTCGGAGGATGGCTCTGATATAACTTTCGAT 431
Query 349 CATCAGAAGAAACCCATCAAGAGAGAGATAATAGAAGATGGTGTGGTGATGATGAAGAAG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CATCAGAAGAAACCCATCAAGAGAGAGATAATAGAAGATGGTGTGGTGATGATGAAGAAG 491
Query 409 AGGAGGAAGATGAAGTTTGATGAGGAAATAACTGGCTCTGATGTGGAAGTATGTGGGAAG 468
|||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 492 AGGAGGAAGATGAAGTTTGATGAGGAGATAATTGATTCTGATGTGGAAGTATGTGGGAAG 551
Query 469 AGGTTTTGGATACCAAGTCCGGCTCAGATTCATGTCGGTCCAATGCAATTTGCTTGCTCT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AGGTTTTGGATACCAAGTCCGGCTCAGATTCATGTCGGTCCAATGCAATTTGCTTGCTCT 611
Query 529 ATTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 ATTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGA 671
Query 589 TCTGAGTTCAGAAAAGGGGCTGACTCCTTGAAGGGCACAA-CACAACCTGCAGCCATCCT 647
|||||||||||||||||||||||||| ||||| ||||||| | ||||| |||||||||||
Sbjct 672 TCTGAGTTCAGAAAAGGGGCTGACTCGTTGAAAGGCACAATC-CAACCGGCAGCCATCCT 730
Query 648 GCGGCTGCCATGCTATTGTTGTGCGGAGGGATGCAAGAACAACATCAACCATCCGCGGTC 707
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 731 GCGGCTGCCATGCTATTGCTGTGCCGAGGGATGCAAGAACAACATCAACCATCCGCGGTC 790
Query 708 CAAGCCCTTGAAGGATTTCCGTACACTTCAGACACATTACAAACGTAAGCATGGCTCCAA 767
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 CAAGCCCCTGAAAGATTTCCGTACACTTCAGACACATTACAAACGTAAGCATGGCTCCAA 850
Query 768 GCCCTTTTCTTGCGGCAAATGTGGCAAAGCGTTGGCTGTGAAAGGTGACTGGAGGACCCA 827
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 851 GCCCTTTTCTTGCGGAAAATGTGGCAAAGCCTTGGCTGTGAAAGGCGACTGGAGGACCCA 910
Query 828 TGAGAAAAACTGCGGAAAGCTTTGGTATTGTACATGTGGATCAGATTTCAAGCACAAGAG 887
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 911 TGAGAAAAACTGCGGAAAGCTTTGGTATTGTACATGTGGATCAGATTTCAAGCATAAGAG 970
Query 888 GTCTCTCAAGGACCACATCAGGTCCTTTGGCAGTGGACATTCTCCTCTCCCATCTCTTTC 947
|||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||
Sbjct 971 GTCTCTCAAGGACCACATTAGGTCCTTTGGCAGTGGACATTCTCCTCACCCGTCTCTTTT 1030
Query 948 GTTTGACGGTTTTGAGGAGGATACAGAATGTGTCACCACAGAGTGA 993
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1031 GTTTGACGGTTTTGAGGAGGATACAGAATGCGTCACCACAGAGTGA 1076
Score = 204 bits (110), Expect = 2e-51
Identities = 151/170 (89%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 9 GATGAATCCTTA--CGA-GAAGGGTTTAAGTTTCGAATCTCCAAGCTTCATTGAATGGCT 65
||||||| |||| || ||| || |||||||||||||| |||||||| |||||||||||
Sbjct 62 GATGAATTCTTATGAGACGAAAGGCTTAAGTTTCGAATCCCCAAGCTTTATTGAATGGCT 121
Query 66 TAAACCTCCATC-T-T-CTACTTCTTCTCAATCTATCTTATATCGTATGAAGACAAGAGA 122
|||||||| ||| | | ||||||||||| ||||| | ||||||||| ||||||||||||
Sbjct 122 TAAACCTCAATCTTCTACTACTTCTTCTAAATCTGTGTTATATCGTGGGAAGACAAGAGA 181
Query 123 TGCTATATCAAGATCAAATCACCACCAGAGTCAGATGAATATGTTGGAAC 172
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 182 TGCTATATCAAGATCAAATCACCACCAGAGTCAGATGAACATGTTGGAAC 231
> AT3G57670.1 | Symbols: NTT, WIP2 | C2H2-type zinc finger family
protein | chr3:21370903-21373446 FORWARD LENGTH=1510
Length=1510
Score = 200 bits (108), Expect = 2e-50
Identities = 314/410 (77%), Gaps = 27/410 (7%)
Strand=Plus/Plus
Query 530 TTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGAT 589
||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 695 TTTGCTTCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGAT 754
Query 590 CTGAGTTCAGAAAAGGGGCTGACTC-CTTGAAGGGCACAACACAACCTGCAGCCATCCTG 648
| | | ||||||||| |||| || || ||||| | | ||||||| ||| || ||
Sbjct 755 CACAATACAGAAAAGGACCTGAATCTCT--AAGGGGA-A-CACAACCAACAGGAATGCTA 810
Query 649 CGGCTGCCATGCTATTGTTGTGCGG-AGGGATG-CAAGAACAACATCAACCATCCGCGGT 706
|||| || |||||||| || || ||| || | |||||||| ||||||| ||
Sbjct 811 AGGCTTCCGTGCTATTGCTGCGCCCCAGGC-TGTCGC-AACAACATTGACCATCCAAGGG 868
Query 707 CCAAGCC-CTTGAAGGATTTCCGTACACTTCAGACACATTACAA-ACGTAAGCATGGC-T 763
| ||||| || ||| | ||| | || ||||| ||||||||||| | | || ||||| |
Sbjct 869 CAAAGCCTCTCAAAG-ACTTCAGAACCCTTCAAACACATTACAAGA-GAAAACATGGGAT 926
Query 764 CCAAGCCCTTTTC-T-TGC-GGCAAATGTGGCAAAG-CGTTGGCTGTGAAAGGTGACTGG 819
| || || ||| | | || || |||||||| |||| | || || || ||| ||||||
Sbjct 927 CAAA-CC-TTT-CATGTGTAGG-AAATGTGG-AAAGGCTTTCGCAGTCCGAGGGGACTGG 981
Query 820 AGGACCCATGAGAAAAACTGCGG-AAAGCTTTGGTATTGTACATGTGGATCAGATTTCAA 878
|| || |||||||| || || || ||| ||||||||||| | ||||||||| ||||||||
Sbjct 982 AGAACACATGAGAAGAATTGTGGCAAA-CTTTGGTATTGCATATGTGGATCTGATTTCAA 1040
Query 879 GCACAAGAGGTCTCTCAAGGACCACATCA-GGTCCTTTGGCAGTGGACAT 927
||||||||| |||||||| || ||||||| || | ||||| | ||| |||
Sbjct 1041 GCACAAGAGATCTCTCAAAGATCACATCAAGG-CTTTTGGGAATGGTCAT 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5