BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334155
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08670.1 | Symbols: | ENTH/VHS family protein | chr1:276034... 1114 0.0
> AT1G08670.1 | Symbols: | ENTH/VHS family protein | chr1:2760346-2761573
REVERSE LENGTH=791
Length=791
Score = 1114 bits (603), Expect = 0.0
Identities = 670/703 (95%), Gaps = 2/703 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAATCTTATGCAGAATCCGGTGTTACATGAACTGAAGAAGCAAGCTTCTTTCTTC 60
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 23 ATGTCTAAGCTTATGCAGAATCCGGTGTTACATGAATTGAAGAAGCAAGCTTCTTTCTTC 82
Query 61 ATCAAGGAAAAGATCAAGACTGCTCGTCTCGCTGTAACCGATGTCACTGCAGAAGAACTA 120
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 83 ATCAAGGAAAAGATCAAGACTGCTCGTCTTGCTGTAACCGATGTTACTGCAGAAGAACTA 142
Query 121 TTGACAGAAGAAGTTACGGGCAGCGATCACTCATCCATAGACTCACGTTCCATGGCGGTC 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 143 TTGACAGAAGAAGTTACGGGCAGCGATCACTCATCCATAGACTCACGCTCCATGGCGGCC 202
Query 181 ATAACAAGAGCTTCTTTTGAGGTTGATCAATTCCAAAGAATCGTGAAGATTTTACGTCAA 240
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 203 ATAACAAGAGTTTCTTTTGAGGTTGATCAATTCCAAAGAATCGTGAAGATTCTACGTCAA 262
Query 241 AGAATGGTAATGTTTGATAGAAGGGAATGGAGGGGCATGTACAACACGTTGTCAATGTTG 300
||||||||| |||||||||||| ||||||| | ||||||| |||||||||||||||||||
Sbjct 263 AGAATGGTAGTGTTTGATAGAAAGGAATGGCGCGGCATGTGCAACACGTTGTCAATGTTG 322
Query 301 AACCACTTGTTGCTCAATGGCCCACTAAGTGTATTCAATGAATTTCAACATGAGA-AGGT 359
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || |
Sbjct 323 AACCACTTGTTGCTCAATGGCCCACTAAGTGTATTCAGTGAGTTTCAACATGAGAGAGCT 382
Query 360 AATTATTGAAGATGCCATAAAGATCGAGTGGATTGATGAGAGAGGGTTCGATTGTGGTCT 419
| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 383 A-TTATTGAAGATGCTATAAAGATGGAGTGGATTGATGAGAGAGGGTTCGATTGTGGTCT 441
Query 420 AAAAGTTCGAAACATAGCCGAGAAAGTATTAAGATTGCTTGAAGATGACATGTTTCTTAA 479
||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 442 AAAGGTTCGAAACATAGCCGAGAAAGTACTAAGATTGCTTGAAGACGACATGTTTCTTAA 501
Query 480 ATATGAGCGAGAAAGAAACCGTAAGCAAAGCATTGGTCGGATCACAGGATTCGGAAACTC 539
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 502 AGATGAGCGAGAAAGAAACCGTAAGCAAAGCATTGGTCGGATCACAGGATTTGGAAACTC 561
Query 540 GAGTTTCACCATACATTCTGAAACGAACAACGGACGAGATGGCTCGTTAATGTTGAGTAA 599
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 562 GAGTTTTGTCATACATTCTGAAACGAACAACGGACGAGACGGCTCGTTAATGTTGAGTAA 621
Query 600 CCATCAAACTTGTGAAAATGATTGTATCGCGGATGATCATCCTTTCGTCGAGAATGAGCA 659
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 622 CCATCAAACTTGTGAAAATGATTGTATCGCGGATGATCATCCATTCGTCGAAAATGAGCA 681
Query 660 CAAGACTGCTCCACTCTTGCTTTCTTCTTCGACTTTGAGTTAG 702
||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 682 CAAGACTGCTCAACTCTTGCTTTCTTCTTCGACTTAGAGTTAG 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5