BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334161
Length=390
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08780.1 | Symbols: AIP3, PFD4 | ABI3-interacting protein 3 ... 604 1e-172
> AT1G08780.1 | Symbols: AIP3, PFD4 | ABI3-interacting protein
3 | chr1:2809778-2811191 REVERSE LENGTH=602
Length=602
Score = 604 bits (327), Expect = 1e-172
Identities = 369/390 (95%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 1 ATGCAGCAGCAAGGAAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 ATGCAGCAGCAAGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAG 125
Query 61 AACATCAATACCTTCAGCCGTCTCAACAACAGATTCCACGATCTCGATGATGAAATCAAA 120
||||| |||| |||||||||||||||||||||| |||| || |||||||| || ||||||
Sbjct 126 AACATTAATATCTTCAGCCGTCTCAACAACAGAGTCCATGACCTCGATGACGATATCAAA 185
Query 121 TCCGCCAAGGAAAAGTGTGAAAATCTAGAGGATGCAGGGAACGAGTTGATCCTTGCTGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TCCGCCAAGGAAAAGTGTGAAAATCTAGAGGATGCAGGGAACGAGTTGATCCTTGCTGAT 245
Query 181 GAGGAGATGGTGCGGTTTCAAATCGGAGAAGTGTTTGCTCATGTGCCCAGGGACGATGTA 240
|||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 246 GAGGAGATGGTGCGTTTTCAAATAGGAGAAGTGTTTGCTCATGTGCCGAGGGACGACGTA 305
Query 241 GAAACAAAGATAGAAGAGATGAAAGAGGCCACTTGCAAAAGCCTTGAGAAGCTTGAGGAA 300
|||||||||||||||||||||||||| || || ||||||||||||||||| || ||| ||
Sbjct 306 GAAACAAAGATAGAAGAGATGAAAGAAGCGACCTGCAAAAGCCTTGAGAAACTCGAGCAA 365
Query 301 GAGAAGAAATCAATTGTAACACAAATGGCAGCGTTGAAGAAGGTATTGTATGCTAAGTTC 360
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 366 GAGAAGGAATCAATTGTAACACAAATGGCAGCGCTGAAGAAGGTATTGTATGCTAAGTTC 425
Query 361 AAAGATTCTATCAATCTTGAAGAAGATTAG 390
|||||||||||||||||||||||||| |||
Sbjct 426 AAAGATTCTATCAATCTTGAAGAAGACTAG 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18397996134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5