BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334176
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08940.1 | Symbols: | Phosphoglycerate mutase family protei... 1327 0.0
> AT1G08940.1 | Symbols: | Phosphoglycerate mutase family protein
| chr1:2877692-2879169 FORWARD LENGTH=913
Length=913
Score = 1327 bits (718), Expect = 0.0
Identities = 802/843 (95%), Gaps = 3/843 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAATGAGAAGAAGATGCTCCCAAAACGCATCATACTAATGCGCCACGGTGAGTCA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3 ATGGTGAATGAGAAGAAGATGCTCCCAAAACGCATCATACTAATGCGTCACGGTGAGTCA 62
Query 61 GCCGGCAACATCGATGCAGGGGCTTACGCGACAACACCCGATCACAAGATCCCTTTAACA 120
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 63 GCCGGTAACATCGACGCAGGGGCTTACGCGACCACACCCGATCACAAGATCCCTCTAACG 122
Query 121 GAAGAAGGACGAGCGCAGGCGCGTGAGGCCGGGAAGAAAATGAGAGCCCTCATATCGACT 180
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 123 GAAGAAGGAAGAGCGCAAGCGCGTGAGGCCGGGAAGAAAATGAGAGCCCTCATATCAACC 182
Query 181 CACAGCGGCAGCGCGTGTGGAGAGAATTGGCGCGTGTACTTCTACGTGTCGCCGTACGAG 240
|| |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 183 CAAAGCGGCGGTGCGTGTGGAGAGAATTGGCGCGTGTACTTCTACGTGTCGCCTTACGAG 242
Query 241 AGAACGAGGACGACTTTGAGGGAAGTAGGGAAAGGGTTCTCGAGGAAGCGCGTGATAGGA 300
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 243 AGAACGAGGACGACTTTGAGGGAAGTAGGAAAAGGATTCTCGAGGAAGCGCGTGATAGGA 302
Query 301 GTGAGAGAAGAGTGTAGGATTAGAGAACAAGATTTTGGGAATTTTCAAGTGGAAGAGAGG 360
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 303 GTGAGGGAAGAGTGTAGGATCAGAGAACAAGATTTTGGGAATTTTCAAGTGGAAGAGAGG 362
Query 361 ATGAGAGCTGTGAAGGAGACGAGGGAACGTTTCGGTAGATTTTTCTATCGTTTTCCCGAA 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ATGAGAGTTGTGAAGGAGACGAGGGAACGTTTCGGTAGATTTTTCTATCGTTTTCCCGAA 422
Query 421 GGTGAATCTGCCGCCGACGTCTACGATCGTGTTTCTAGTTTTCTGGAGTCTATGTGGAGA 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGTGAATCCGCCGCCGACGTCTACGATCGTGTTTCTAGTTTTCTGGAGTCTATGTGGAGA 482
Query 481 GACGTGGACATGAACAGGCATCAAGTGGATCCATCAAGTGAACTAAATCTAGTGATTGTG 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 483 GACGTGGACATGAACAGGCATCAAGTGGATCCATCAAGTGAACTAAACCTAGTGATTGTG 542
Query 541 TCCCACGGACTGACCTCTCGGGTGTTTCTAACGAAATGGTTCAAGTGGACGGTGGAAGAG 600
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct 543 TCCCACGGACTGACATCTCGAGTGTTTCTAACAAAATGGTTCAAGTGGACGGTGGCAGAG 602
Query 601 TTCGAGCGGTTGAACAATTTTGGGAACTGCGAGTTCAGAGTGATGGAGTTGGGTGCGAGC 660
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TTCGAGCGGTTGAATAACTTTGGGAACTGCGAGTTCAGAGTGATGGAGTTGGGTGCGAGC 662
Query 661 GGAGAGTACACTTTCGCGATACACCATACTGAAGAAGAGATGTTGGATTGGGGGATGTCT 720
|||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct 663 GGAGAGTACACTTTCGCGATACACCACAGTGAAGAAGAGATGTTGGATTGGGGCATGTCT 722
Query 721 AAAGATATGATTGATGATCAAAAGGAACGTGTTGATGGTTGCCGTGTAACATC-T-AA-C 777
|||||||||||||||||||||||||| ||||||||||| || ||||||||| | | || |
Sbjct 723 AAAGATATGATTGATGATCAAAAGGATCGTGTTGATGGGTGTCGTGTAACAACATCAAAC 782
Query 778 GATTCTTGTTCATTGCATCTCCATGAATATTTTGATTTGTTAGATGTGACTGATGATGAT 837
||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 783 GATTCTTGTTCATTGCATCTCAATGAGTATTTTGATTTGTTAGATGTCACTGATGATGAA 842
Query 838 GAA 840
|||
Sbjct 843 GAA 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5