BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334205
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56450.1 | Symbols: PBG1 | 20S proteasome beta subunit G1 | ... 782 0.0
> AT1G56450.1 | Symbols: PBG1 | 20S proteasome beta subunit G1
| chr1:21141883-21144400 FORWARD LENGTH=1042
Length=1042
Score = 782 bits (423), Expect = 0.0
Identities = 635/738 (86%), Gaps = 12/738 (2%)
Strand=Plus/Plus
Query 6 TTTCATGATTCCGATTGAGAAC-GAGAATGGAGTGAAGAACGCTGAGGCTGATTCCCAAA 64
|||| || |||||||||| ||| |||| | | |||||| ||| || | || || ||||
Sbjct 98 TTTC-TG-TTCCGATTGATAACGGAGATTCTA-TGAAGATCGCAGAAGAAGAATCACAAA 154
Query 65 GAACATTGTACCCGTATGTTACTGGAACCTCAGTGGTGGCTATCAAGTACAAAGATGGGA 124
||||| ||||||| |||||||||||||| ||| | || || ||||||||||||||||||
Sbjct 155 GAACACTGTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGTACAAAGATGGGG 214
Query 125 TTTTAATGGCTTCTGATATGGGAGGTTCATATGGATCCACCTTAAGGTACAAGAACATTG 184
|||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 215 TTTTGATGGCTTCTGATATGGGAGGTTCATATGGATCAACCTTAAGATACAAGAACATCG 274
Query 185 AGAGAATGCAGGCTATTGGTAAGCATTCTCTTCTTGGTGCCAGTGGGGAAATCAGCGACT 244
||||| || |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 275 AGAGAGTGAAGGCTATTGGTAAGCATTCTCTTCTTGGTGCCAGCGGAGAAATCAGCGACT 334
Query 245 TCCAAGAAATTTTGCGTTATCTTGACGAGCTCATGCTGAATGATAACATGTGGGATGATG 304
| || || ||| | ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 335 TTCAGGAGATTCTCCGTTATCTTGATGAGCTCACCCTGAATGATAACATGTGGGATGATG 394
Query 305 GTAATTCCTTGGGGCCGAAAGAGGTTCATAACTATCTGACCCGAGTTATGTATAATCGCC 364
|||| || ||||| || |||||| |||| |||||||||||||| || ||||| || || |
Sbjct 395 GTAACTCTTTGGGACCAAAAGAGATTCACAACTATCTGACCCGTGTGATGTACAACCGTC 454
Query 365 GGAACAAGTTCAACCCTTTGTGGAACACTCTTGTCCTTGGAGGTGTCAAAAATGGGGAGA 424
| |||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| | |
Sbjct 455 GCAACAAGTTTAACCCTCTGTGGAACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAA-A 513
Query 425 AGT-ACCTTGGGATGGTCTCAATGATTGGTGTTAGTTTTGAGGACAACCATGTTGCCACT 483
||| ||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||
Sbjct 514 AGTTACCTTGGAATGGTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACT 573
Query 484 GGTTTTGGGAGTCACCTAGCTAGGCCCATTCTTCGCGACGAATGGCGTG-AGGACCTGAG 542
|| ||||| | ||||| |||||||| |||||||| || || |||| || || |||||||
Sbjct 574 GGATTTGGAAACCACCTTGCTAGGCCAATTCTTCGTGATGAGTGGCATGCAG-ACCTGAG 632
Query 543 TTTTGAAGAAGGTGTCAAACTACTGGAGAAATGTATGCGTGTACTTCTTTACCGTGACAG 602
||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 633 TTTTGAAGATGGTGTCAAGCTACTTGAGAAATGTATGCGTGTGCTTCTTTACCGTGACAG 692
Query 603 ATCTGCTATCAACAAACTTCAGATAGCAAAGATGACAGAGGAAGGCGTGACTGTCTCTGA 662
||||||||| ||||| ||||||||||| ||||| || || || |||||||| ||||| |
Sbjct 693 ATCTGCTATTAACAAGCTTCAGATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACA 752
Query 663 GCCATACTCGCTT-AAGACATTCTGGGATTTCAAGGCGTTCGCA-AACCCAACAGTTGGT 720
||||||||| || ||||||| |||||| ||| | | ||| || |||||||| | ||||
Sbjct 753 GCCATACTCA-TTGAAGACATACTGGGAATTCTCGTCATTC-CACAACCCAACTGCTGGT 810
Query 721 GCAGAAGGCTCCTGGTAA 738
|| | |||||||||||||
Sbjct 811 GCTGCAGGCTCCTGGTAA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5