BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334218
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09390.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1696 0.0
> AT1G09390.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:3031203-3033582 FORWARD LENGTH=1341
Length=1341
Score = 1696 bits (918), Expect = 0.0
Identities = 1050/1115 (94%), Gaps = 4/1115 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACTGTCTCTCTTCACTCCCACTCTTTCATCCTTGTTCTCTTTCCGGTCATCCTC 60
||||||||| ||||||||||||||||||||||| | ||||||||| ||||| | ||||||
Sbjct 62 ATGGCTACTCTCTCTCTTCACTCCCACTCTTTCCTTCTTGTTCTCCTTCCGTTTATCCTC 121
Query 61 ATTCTCCGACATAACTTGGCGGTGGCCGGAGGATGTCA-GTTGCCGCCGGTGATCTTTAA 119
||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||| |||||
Sbjct 122 ATTCTCCGACAAAACTTGGCAGTGGCCGGAGGATGTCAGGTT-CCGCCGGTGATTTTTAA 180
Query 120 CTTTGGAGATTCCAACTCCGACACGGGTGGACTCGTCGCTGGTCTCGGCTACAGCATTGG 179
|||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 181 CTTTGGCGATTCCAACTCCGACACGGGTGGACTCGTCGCCGGACTCGGATACAGCATTGG 240
Query 180 TATTCCTTACGGTCGCTCATTTTTCGAGAGATCCACCGGCCGATTATCCGACGGACGCCT 239
| ||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TCTTCCTAACGGTCGTTCGTTTTTCCAGAGATCCACCGGCCGATTATCCGACGGACGCCT 300
Query 240 CGTCATCGATTTCCTCTGCCAGAGTTTGAATACAAGTCTACTGAACCCATACTTAGACTC 299
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 CGTCATCGATTTCCTTTGCCAGAGTTTGAATACAAGTCTATTGAACCCATACTTAGACTC 360
Query 300 ATTGGTTGGATCAAAGTTCCAAAACGGTGCCAATTTCGCAATAGTTGGATCGTCCACTCT 359
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 361 ATTGGTTGGATCAAAGTTCCAAAACGGTGCCAATTTCGCAATTGTTGGATCTTCCACTCT 420
Query 360 TCCCCGATATGTTCCTTTTGCTCTCAACATTCAGCTTATGCAGTTCCTCCATTTCAAATC 419
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TCCCAGATATGTTCCTTTTGCTCTCAACATTCAGCTCATGCAGTTCCTCCATTTCAAATC 480
Query 420 CCGAGCACTCGAGCTTGCTTCTACTTCAGATCCTTTGAAAGAGATGCTGATAAGCGATAG 479
||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| ||
Sbjct 481 CCGAGCACTCGAGCTTGCTTCTATTTCAGATCCTTTGAAAGAGATGATGATAGGCGAAAG 540
Query 480 CGGATTCAGAAATGCGTTGTACATGATCGATATCGGGCAGAATGATATTGCGGATTCATT 539
||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 TGGATTCAGAAACGCATTGTACATGATCGATATCGGACAGAATGATATTGCGGATTCATT 600
Query 540 TTCCAAAGGCCTTTCTTACTCCCGTGTCGTCAAGCTTATTCCAAACGTTATTTCTGAGAT 599
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 601 CTCCAAAGGCCTTTCTTACTCCCGGGTCGTCAAGCTTATTCCAAACGTTATTTCCGAGAT 660
Query 600 CAAAAGTGCCATAAAGATATTGTATGATGAAGGAGGGAGGAAATTCTGGGTTCACAACAC 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 CAAAAGTGCCATAAAGATATTGTATGATGAAGGAGGGAGGAAATTTTGGGTTCACAACAC 720
Query 660 AGGACCCTTAGGTTGTCTGCCTCAGAAACTGTCAATGGTTCATAGCAAAGCTTTTGATAA 719
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 721 AGGACCATTAGGTTGTCTGCCTCAGAAACTTTCAATGGTTCATAGCAAAGGTTTTGATAA 780
Query 720 GCATGGTTGTCTAGCAAGTTATAACGCAGCTGCAAAACTGTTTAACGAAGGATTGGATCA 779
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 781 GCATGGTTGTCTAGCAACTTATAACGCAGCTGCAAAACTGTTTAACGAAGGACTGGATCA 840
Query 780 TATGTGTCGGGAGCTGAGGATGGAGCTGAAAGAGACCAACATAGTCTATGTCGACATTTA 839
|||||||||||| ||||||| ||| ||||||||| ||||||| |||||||||||||||||
Sbjct 841 TATGTGTCGGGATCTGAGGACGGAACTGAAAGAGGCCAACATTGTCTATGTCGACATTTA 900
Query 840 TGCCATCAAGTATGATCTCATCGCAAACTCCTACAATTACGCCTTTGAGAAACCCTTAAT 899
|||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 901 TGCCATCAAGTACGATCTCATCGCAAACTCCAACAATTATGGCTTTGAGAAACCCTTAAT 960
Query 900 GGCGTGTTGCGGATACGGAGGGCCTCCTTACAACTATAATGTGAACATAACGTGTGGGAA 959
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 961 GGCATGTTGCGGATACGGAGGGCCTCCTTACAACTACAATGTGAACATAACGTGTGGGAA 1020
Query 960 CGGTGGCTCCCAAAGTTGCGATGAAGGGTCTCGGTTTATAAGCTGGGATGGAATACACTA 1019
|||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1021 TGGTGGCTCTAAAAGTTGCGACGAAGGGTCTCGGTTTATAAGCTGGGACGGAATACACTA 1080
Query 1020 CACCGAGACCT-CTAACGCCATTATAGCCATGAAAGTATTGTCGATGCAATACTCTACGC 1078
||||||||| | ||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 1081 CACCGAGAC-TGCTAACGCCATTGTAGCCATGAAAGTATTGTCGATGCAACATTCTACGC 1139
Query 1079 CACCAACTCCGTTTCATTTCTTCTGCGGCGGCTGA 1113
||||||||||||| |||||||||||||||||||||
Sbjct 1140 CACCAACTCCGTTCCATTTCTTCTGCGGCGGCTGA 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5