BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg334257 Length=918 Score E Sequences producing significant alignments: (Bits) Value AT1G03580.1 | Symbols: | pseudogene, meprin and TRAF homology ... 616 2e-175 > AT1G03580.1 | Symbols: | pseudogene, meprin and TRAF homology (MATH) domain protein -related, weak similarity to ubiquitin-specific protease 12 (Arabidopsis thaliana) GI:11993471; contains weak hit to Pfam PF00917: MATH domain | chr1:892847-894052 FORWARD LENGTH=1206 Length=1206 Score = 616 bits (333), Expect = 2e-175 Identities = 407/443 (92%), Gaps = 4/443 (1%) Strand=Plus/Plus Query 478 GCTCTTTCATGGACCCATATTTTAAGTCGGCACCCAGACTTTGAAGTAGATTTCGTGCCA 537 |||||||||| || | ||||||||||| ||||| |||||||||||||||||||||||| Sbjct 723 GCTCTTTCATTTTCCAAAATTTTAAGTCGCCACCCGGACTTTGAAGTAGATTTCGTGCCA 782 Query 538 AAGTACGAGGAGCTGAGGT--CAGTGTACTTGACTCTCTTCTTCTGCCTCATCGAGACAC 595 |||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||| Sbjct 783 AAGTACCAGGAGCT-A-CTACCAGTGTACTTGACTCTCTTCTTCTGCCTCATCGAGACAC 840 Query 596 TGAGCAAGTCTCCACAGAGCTTGTCTGCGGCTGAACTAACCAACGCTCAAAACCAACTGT 655 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 841 TGAGCAAGTCTCCACAGAGCTTGTCTGCGGATGAACTAACCAATGCTCAAAACCAACTGT 900 Query 656 CTGAGCTGACGAAAGTAGGCTTCAAGCTAGACTGGTTGAAGTCTAAGCTCGAGGAGGTTT 715 | ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 901 CCGAGCTCACAAAAGTAGGCTTCAAGCTAGACTGGTTGAAGTCTAAGCTCGAGGAGCTTT 960 Query 716 CCTTGGAGAGGAATAAAGCAGTTACCGATGGTTGTCATGTCCTCGAGGAACGGGTCAAGA 775 ||||||||||||| ||||||||| |||||| ||||||||||||| | ||||||||||| | Sbjct 961 CCTTGGAGAGGAAGAAAGCAGTTCCCGATGCTTGTCATGTCCTCCACGAACGGGTCAAAA 1020 Query 776 ATGTGGAATTGACTTTGTCCGGTCTCCAAGTTAAACTGGACAAGGACAAGATCAAATATA 835 |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1021 ATGTGGAACTGACTTTGTCCAATCTCCAAGTTAAACTGGACAAGGACAGGATCAAATATG 1080 Query 836 CTGCTGCTGCTGCTGGAGTGTCTTCGTTTGGGTTCATTGGTTTTCTTATCAAGAGATTCT 895 ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| Sbjct 1081 CTGCTGCTGCTGCTGGAGTTTCTTCCTTTGGGTTCATTGGTTTTTTTATCAAGAGATTCG 1140 Query 896 TTCTCTCTTGTTTCTCAGTCTGA 918 |||||||||| ||||| |||||| Sbjct 1141 TTCTCTCTTGCTTCTCGGTCTGA 1163 Score = 189 bits (102), Expect = 4e-47 Identities = 142/161 (88%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 113 TTATTGTTCACCCCAAGGGCCACCCTGGTTATGATCATCACTTGTCTCTGTTTCTGAGCG 172 ||||| |||| ||||||||| |||||||||||||| ||||||||||||| ||||||| || Sbjct 202 TTATTCTTCATCCCAAGGGCTACCCTGGTTATGATAATCACTTGTCTCTATTTCTGAACG 261 Query 173 T-CTTGAATCTTAG-ATCATTGAGACTTGGATGGCATAGGAGAGTTCGCTGTTTCTTCGT 230 | | | |||||| | ||||||||||||||||||| | |||||| ||||| ||||||||| Sbjct 262 TACCT-AATCTT-GAATCATTGAGACTTGGATGGAAAAGGAGAACTCGCTTTTTCTTCGT 319 Query 231 TATTTTGAATCAATCCGGCAAAGAGCTCTGCAGAACCACTA 271 ||||||||||||||||||||| |||||||||||| || ||| Sbjct 320 TATTTTGAATCAATCCGGCAACGAGCTCTGCAGATCCCCTA 360 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44859093271 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5