BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334257
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03580.1 | Symbols: | pseudogene, meprin and TRAF homology ... 616 2e-175
> AT1G03580.1 | Symbols: | pseudogene, meprin and TRAF homology
(MATH) domain protein -related, weak similarity to ubiquitin-specific
protease 12 (Arabidopsis thaliana) GI:11993471;
contains weak hit to Pfam PF00917: MATH domain | chr1:892847-894052
FORWARD LENGTH=1206
Length=1206
Score = 616 bits (333), Expect = 2e-175
Identities = 407/443 (92%), Gaps = 4/443 (1%)
Strand=Plus/Plus
Query 478 GCTCTTTCATGGACCCATATTTTAAGTCGGCACCCAGACTTTGAAGTAGATTTCGTGCCA 537
|||||||||| || | ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 723 GCTCTTTCATTTTCCAAAATTTTAAGTCGCCACCCGGACTTTGAAGTAGATTTCGTGCCA 782
Query 538 AAGTACGAGGAGCTGAGGT--CAGTGTACTTGACTCTCTTCTTCTGCCTCATCGAGACAC 595
|||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 783 AAGTACCAGGAGCT-A-CTACCAGTGTACTTGACTCTCTTCTTCTGCCTCATCGAGACAC 840
Query 596 TGAGCAAGTCTCCACAGAGCTTGTCTGCGGCTGAACTAACCAACGCTCAAAACCAACTGT 655
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 841 TGAGCAAGTCTCCACAGAGCTTGTCTGCGGATGAACTAACCAATGCTCAAAACCAACTGT 900
Query 656 CTGAGCTGACGAAAGTAGGCTTCAAGCTAGACTGGTTGAAGTCTAAGCTCGAGGAGGTTT 715
| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 CCGAGCTCACAAAAGTAGGCTTCAAGCTAGACTGGTTGAAGTCTAAGCTCGAGGAGCTTT 960
Query 716 CCTTGGAGAGGAATAAAGCAGTTACCGATGGTTGTCATGTCCTCGAGGAACGGGTCAAGA 775
||||||||||||| ||||||||| |||||| ||||||||||||| | ||||||||||| |
Sbjct 961 CCTTGGAGAGGAAGAAAGCAGTTCCCGATGCTTGTCATGTCCTCCACGAACGGGTCAAAA 1020
Query 776 ATGTGGAATTGACTTTGTCCGGTCTCCAAGTTAAACTGGACAAGGACAAGATCAAATATA 835
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1021 ATGTGGAACTGACTTTGTCCAATCTCCAAGTTAAACTGGACAAGGACAGGATCAAATATG 1080
Query 836 CTGCTGCTGCTGCTGGAGTGTCTTCGTTTGGGTTCATTGGTTTTCTTATCAAGAGATTCT 895
||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 1081 CTGCTGCTGCTGCTGGAGTTTCTTCCTTTGGGTTCATTGGTTTTTTTATCAAGAGATTCG 1140
Query 896 TTCTCTCTTGTTTCTCAGTCTGA 918
|||||||||| ||||| ||||||
Sbjct 1141 TTCTCTCTTGCTTCTCGGTCTGA 1163
Score = 189 bits (102), Expect = 4e-47
Identities = 142/161 (88%), Gaps = 4/161 (2%)
Strand=Plus/Plus
Query 113 TTATTGTTCACCCCAAGGGCCACCCTGGTTATGATCATCACTTGTCTCTGTTTCTGAGCG 172
||||| |||| ||||||||| |||||||||||||| ||||||||||||| ||||||| ||
Sbjct 202 TTATTCTTCATCCCAAGGGCTACCCTGGTTATGATAATCACTTGTCTCTATTTCTGAACG 261
Query 173 T-CTTGAATCTTAG-ATCATTGAGACTTGGATGGCATAGGAGAGTTCGCTGTTTCTTCGT 230
| | | |||||| | ||||||||||||||||||| | |||||| ||||| |||||||||
Sbjct 262 TACCT-AATCTT-GAATCATTGAGACTTGGATGGAAAAGGAGAACTCGCTTTTTCTTCGT 319
Query 231 TATTTTGAATCAATCCGGCAAAGAGCTCTGCAGAACCACTA 271
||||||||||||||||||||| |||||||||||| || |||
Sbjct 320 TATTTTGAATCAATCCGGCAACGAGCTCTGCAGATCCCCTA 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5