BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg334263

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09812.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   671    0.0  


> AT1G09812.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G58007.2); 
Has 93 Blast hits to 93 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3187817-3188580 
FORWARD LENGTH=387
Length=387

 Score =  671 bits (363),  Expect = 0.0
 Identities = 379/387 (98%), Gaps = 0/387 (0%)
 Strand=Plus/Plus

Query  1    ATGAACAAGTCAAGCTCGTGGAGCATATACAGTCCCAGAGATGGAGAGAGTGAAGGGCCA  60
            ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  1    ATGAACAAGTCAAGCTCATGGAGCATATACAGTCCCAGAGAGGGAGATAGTGAAGGGCCA  60

Query  61   TGGAGATCGTCAACGTCGATGAATGCAATCTCATTTGGGTTTGTAGCGACGGCGATACTC  120
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   TGGAGATCGTCAACGTCGATGAATGCGATCTCATTTGGGTTTGTAGCGACGGCGATACTC  120

Query  121  ATCTCTATGTTCTTGATCATGGCCATATTCGAGCATCTCTTTAGGCCTGAGAATTCTTCA  180
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATCTCCATGTTCTTGATCATGGCCATATTCGAGCATCTCTTTAGGCCTGAGAATTCTTCA  180

Query  181  TTTGATTCACCACATCAGATCAGACAAAGACAGAGAGATGGGTCCAGTCAGTTCCAGAAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTTGATTCACCACATCAGATCAGACAAAGACAGAGAGATGGGTCCAGTCAGTTCCAGAAA  240

Query  241  CTTGCTGATCAAGCATCAATGGTTCCGGTGAATACGGTGGTGGATGTATCGGTAGTGATG  300
            ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct  241  CTTGCTGATCAAGCATCCATGGTTCCGGTGAGTACGGTGGTGGATGTATCGGTAGTGATG  300

Query  301  CCAGGGGAGAAGTTGCCGTCGCACATAGCTTTGCCGGCTCCGTTACCTTGTCGGAGAGAA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CCAGGGGAGAAGTTGCCGTCGCACATAGCTTTGCCGGCTCCGTTACCTTGTCGGAGAGAA  360

Query  361  GGCATTCATTGGCCTCTCCACCTCTAA  387
            ||||||||||||||||||| |||||||
Sbjct  361  GGCATTCATTGGCCTCTCCGCCTCTAA  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5