BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334268
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09860.1 | Symbols: ATPUP16, PUP16 | purine permease 16 | ch... 1760 0.0
> AT1G09860.1 | Symbols: ATPUP16, PUP16 | purine permease 16 |
chr1:3204016-3205309 REVERSE LENGTH=1294
Length=1294
Score = 1760 bits (953), Expect = 0.0
Identities = 1089/1154 (94%), Gaps = 12/1154 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAGTTTCAAGGTCCAGAACCACGCAGCCAGATGATGAGCGAGAATTCTCGATCC 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 23 ATGGAAGAGTTTCAAGGTCCAGAACCACGCGGCCAAATGATGAGCGAGAATCCTCGATCC 82
Query 61 CTGGAGCTCAATCAGCGCAAATGGTGGATCTCTGTTTTCT-TCTGCGGTTTCATGATCTT 119
||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 83 TTGGAGCTCAATCAACGCAAATGGTGGATCTCTGTTTT-TATCTGCGGTTTCTTGATCTT 141
Query 120 TACGGGAGATTCTCTTGTCATGCTTCTGTTGAACTTCTTCTACGTCCAAGATAATCGATC 179
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TGCCGGAGACTCTCTTGTCATGCTTCTGTTGAACTTCTTCTACGTCCAAGATAATCGATC 201
Query 180 AGAGAGTGATCAGGACCGACAATACAAAGGAACATGGACACAAGCTCTGATCCAAAACGC 239
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 202 AGAGAGTGATCAAGACCGACAATACAAAGGGACATGGACACAAGCTCTGATCCAAAACGC 261
Query 240 CGCCTTTCCAATCTTGATTCCATTCTTTTTCAAAT-TTTCTT---C---ACCGAACCTGG 292
|||||||| ||||| ||||||||||| ||| | | |||||| | ||| |||| ||
Sbjct 262 TGCCTTTCCGATCTTAATTCCATTCTTCTTC-ATTCTTTCTTCACCAAAACCAAACCCGG 320
Query 293 AAACAGTCTCCAATCAAACCAACAACGGCTGGTTTCGAGTTCTCCCGCTATACGTTTCTC 352
||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||
Sbjct 321 AAACAGTCTCCAATCAAACAAACAATGGCTGGTTTCGAGTTCTCTCGCTCTACGTTTCTC 380
Query 353 TCGGTGTTCTTGTCTCTGTTTATAGCAAGTTATATGCGCTAGCGAAATTATACGTAGGAT 412
| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 381 TTGGTGTTCTTGTCTCTGTTTATAGCAAGTTATACGCGCTGGGGAAATTATACGTAGGAT 440
Query 413 GGGGGATTTTGGTATCAACTCAATTGATACTCACCTCCCTCTTCTCAGCTTTCATTAACC 472
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 441 GGGGAATTTTGTTATCAACTCAATTGATACTCACCTCCCTCTTCTCAGCTTTCATAAACC 500
Query 473 GTCTCAAGTTTAACAGATGGATCATCATATCGATAATCTTCACTCTTGCGGCCGACTTTT 532
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 501 GTCTCAAGTTTAACAGATGGATCATCATATCGATAATCTTCACTCTTGGGGCTGACTTTT 560
Query 533 TTGGCAGCCCTGCGTTTGCTGGAACCCCTGATGAAGATGAAACTGATGCTTACGACATCA 592
|||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 561 TTGGTGGCCCTGCCTTTGCTGGAACCCCTAATGAAGATGAAACTGATCCTTACGACATCA 620
Query 593 AGGCATGGTTGATACTCATATTCCCTACTCTTGCTTTCTCCTTGTCTCTGTGCCTAATGC 652
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 621 AGGCATGGTTGATACTCATATTCCCTACTCTTGCTTTCTCCTTGTCTCTGTGCTTAATGC 680
Query 653 AGCTCGGGTTCGAAAAAGTGTTGGTGAAGACAAAGAGGTATGGTAACAAGAAGGTGTTTC 712
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 681 AGCTCGGATTCGACAAAGTGTTGGTGAAGACAAAGAGGTATGGTAACAAGAAGGTCTTTC 740
Query 713 GGATGGTCTTGGAGATGCAAATCTGTGTTTCCTTCATCGCCACACTCGTTTGCACTGTGG 772
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 741 GGATGGTCTTGGAGATGCAAATCTGTGTTTCCTTCATCGCCACACTCATTTGCACTGTGG 800
Query 773 GTCTGTTTGCGAGTGGTGAGTTTAAGGAGTTAAAAGGTGACAGTGAGAGGTTTAAGAAAG 832
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 801 GTCTGTTTGCGAGTGGTGAGTTTAAGGAGTTAAAAGGCGACAGCGAGAGGTTTAAGAAAG 860
Query 833 GGAAAACTTACTACATTCTGAGTTTGGTCGGGTTGGCTCTCTCTTGGCAGGTTTGGGCGG 892
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 GGAAGACTTACTACATTCTGAGTTTGGTCGGGTTGGCTCTCTCTTGGCAGGTTTGGGCGG 920
Query 893 TCGGGCTGTTAGGTCTGGTGCTTTTGGTGTCCGGTTTATTCACTGATGTTGTTCATATGT 952
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 921 TCGGGCTGTTAGGTTTGGTGCTTTTGGTGTCCGGTTTATTCGCTGATGTTGTTCATATGG 980
Query 953 GTGCTTCACCTGTTGTGGCTCTGCTTGTTGTGTTGGCTTTTGATTTCATGGACGACGACT 1012
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 981 GTGCTTCACCGGTTGTGGCTCTGCTAGTTGTGTTGGCTTTTGATTTCATGGACGATGAAT 1040
Query 1013 TTGGTTGGCAGAGAAGAGGTGCTTTGCTAGGGGCAGTCTTGGCCCTAGCTTCTTACTTCT 1072
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1041 TTGGTTGGCAGAGAAGAGGTGCTTTGCTAGGGGCGGTCTTGGCTCTAGCTTCTTACTTCT 1100
Query 1073 ACTCCCTGCACA-AAACAAAGAAGAAGGAGATCGCAGAACTGAACAAGAGAGAGAACAAC 1131
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ACTCCCTGCACACAAA-AAAGAAGAAGGAGATCGCAGAACTGAACAAGAGAGAGAACAAC 1159
Query 1132 AACAGTGAAGCTTA 1145
||||||||||||||
Sbjct 1160 AACAGTGAAGCTTA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5