BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334284
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10095.1 | Symbols: | Protein prenylyltransferase superfami... 739 0.0
> AT1G10095.1 | Symbols: | Protein prenylyltransferase superfamily
protein | chr1:3297324-3300443 REVERSE LENGTH=1507
Length=1507
Score = 739 bits (400), Expect = 0.0
Identities = 567/639 (89%), Gaps = 45/639 (7%)
Strand=Plus/Plus
Query 1 ATGAGACAAGGACCATGTTCTGAAGAAGATTGCTTTATCTTGTTGAAGCAGTTCGAGCAT 60
|||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 91 ATGAAACAAGGACCATCTTCTGAAGATGATTGCTTTAGCTTGTTGAAGCAGTTCGAGCAT 150
Query 61 GTTCTTGAATCTGACCCTCTTATTGATGAAGTAGGGTTTATTCACCCCTCACAGTTCAAC 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 151 GTCCTTGAATCTGACCCTCTTATTGATGAAGTAGGGTTTATTCACCCCTCACAGTTCA-C 209
Query 121 C-TGCTGGATGAAGAAGCAGGTTTCTCCAATGTGTATCAAAATGAACTCCAGCCTAACAA 179
| |||| ||| ||||||||||||||||||||| | | | |||||||||||||
Sbjct 210 CATGCTCGATAAAGAAGCAGGTTTCTCCAATG---A--A---T----TCCAGCCTAACAA 257
Query 180 TGGAACCTCAAGAAAGTTCTGGAATCAAGATCACAAATTGGGAATATCAACTGATATTCT 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 258 TGGAACCTCAAGCAAGTTCTGGAATCAAGATCACAAATTGGGAATATCAACTGATATACT 317
Query 240 TGTTCAATTATGTAAATATGCCAAACATGCGTTTCTGCTTGCGCTTGATGAGTACAAA-C 298
|||||||||||||||| |||||||||||| ||||||||| |||||| | ||||||||| |
Sbjct 318 TGTTCAATTATGTAAAGATGCCAAACATGTGTTTCTGCTAGCGCTTCAGGAGTACAAATC 377
Query 299 GCCATGGAAA----T---AT----CTC---TT--G--T-TC-C-----C-CCA-GTACTC 331
||||||||| | || ||| || | | || | | || ||| ||
Sbjct 378 -CCATGGAAACGCATGTGATGAGTCTCAGATTAAGAATATCTCTTGTTCTCCCTGTATTC 436
Query 332 CCGAGAGTGAAGTCATGAAGCATAGCCAAGCTGTTTTGCTGTTAAGCTCAGACTTTGGAA 391
|||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 437 CCGAGAGTGACGTCATGAAGCATAGCCAATCTGTTTTGCTGTTGAGCTCAGACTTTGGAA 496
Query 392 CTGCATGGAATGCTAGGAAGTTGATTTTGTCAAAAAAGGATCAACTTTCGGCATTCAC-G 450
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 497 CTGCATGGAATGCTAGGAAGTTGATTTTGTCAAAAAAGGATCACCTTTCGGCATTCACAG 556
Query 451 CAAGAACTTCGTCTTTCTGGGCTCATTCTTTCAAATTCTCCTAAGAGTGAGTCAACATGG 510
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 557 -AAGAACTTCGTCTTTCTGGGCTCATTCTTTCAAATTCCCCAAAGAGTGAGTCAACATGG 615
Query 511 AGCCATAGAAGGTGGATAATTAAGATGATTTCCCTGGGATTTCCTACACTACAAGTGATT 570
|||||||||||||||||||||||||||||||||| | | ||| |||||||||||| ||||
Sbjct 616 AGCCATAGAAGGTGGATAATTAAGATGATTTCCCAGAGTTTTTCTACACTACAAGAGATT 675
Query 571 ATAACCAAAGAATCTGAGTTAGTGGAATCAATAGGCGAG 609
|||||||||||||||||||||||||||||||||||||||
Sbjct 676 ATAACCAAAGAATCTGAGTTAGTGGAATCAATAGGCGAG 714
Score = 494 bits (267), Expect = 8e-139
Identities = 330/360 (92%), Gaps = 6/360 (2%)
Strand=Plus/Plus
Query 607 GAGGCCCTATGGCTTCACCGGCGGTTCCTCTCTCTTAATTGGATAATGTATTTCACTTGC 666
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 994 GAGGCACTATGGCTTCACCGGCGGTTCCTCTCTCTTAATTGGATAATGTATTTCGCTTGC 1053
Query 667 AATGATTCAGATGTTTCACCTGAACCCGGAGAGAGTATCATTATGAATGAAGAAATTGCC 726
||| ||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1054 AATCATTCAGATGCTTCACCTGAAACCGGAGAGAGTATTATTATGAATGAAGAAATTGCC 1113
Query 727 ATCTTCATTAATAATGAGATCCGTCTCCTAGAATCTGCTATGACTGTTCCGGATACCAAA 786
||||||||| |||||||||||||||| ||||| ||| ||||||| |||||||||||||||
Sbjct 1114 ATCTTCATTGATAATGAGATCCGTCTTCTAGATTCTTCTATGACCGTTCCGGATACCAAA 1173
Query 787 TTTGAAGATTTCCAAGCTCAAGCATTGCATACTGGTGTCTACATGCTATGGCTGACAAAG 846
||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct 1174 TTTGAAGATTTTCAAGCTCAAGCATTGCATGCTGCTGTCTACACGCTATGGCTGACAAAG 1233
Query 847 AAAATGCCAGAATTGTGGAGAATGCTTGAGGAGAAGCTTGGAACAGAGAAAGTGAAGTGT 906
| || |||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1234 AGCATTCCAGTACTGTGGAGAATGCTCGAGGAGAAGCTTGGAACAGAGAAAGTGAAGTGT 1293
Query 907 GTAATGAGCACAATTGCTCAAGAGAGACCCTCAC------ATCATTTGGTGAATGTCTGA 960
||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1294 GTACTGAACACAATTGCTCAAGAGAGACCCTCGCTTCTGCATCATTTGGTGAATGTCTGA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5