BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334309
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10450.1 | Symbols: SNL6 | SIN3-like 6 | chr1:3431780-343837... 774 0.0
AT1G59890.2 | Symbols: SNL5 | SIN3-like 5 | chr1:22043829-22051... 466 1e-130
AT1G10250.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 457 7e-128
> AT1G10450.1 | Symbols: SNL6 | SIN3-like 6 | chr1:3431780-3438370
FORWARD LENGTH=4024
Length=4024
Score = 774 bits (419), Expect = 0.0
Identities = 451/466 (97%), Gaps = 3/466 (1%)
Strand=Plus/Plus
Query 164 TCATCAAATGTTGTACGAGAGAATACAAAACAACAAAGAAACATTCAGAAAAGAAATGGA 223
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2912 TCATCAAATGTTGTACGAGAGAATAC-AAACAGCAAAGAAACATTCAGAAAAGAAATGGA 2970
Query 224 AGGCTCCAGATAACACGACTCTTGATTCTTATCCCAGGTTCATGGATGCACTCTATAATT 283
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2971 AGGCTGCAGATAACACGACTCCTGATTCTTATCCCAGGTTCATGGATGCACTCTATAATT 3030
Query 284 TACTTGACGGTTCTATTGACAATACCAAGTTTGAAGATGAGTGCCGAGCTATTTTTGGAG 343
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3031 TACTTGACGGTTCTATTGACAATACAAAGTTTGAAGATGAGTGCCGAGCTATTTTTGGAG 3090
Query 344 CACAGTCATATGTTCTTTTCACATTGGACAAGCTAGTTCAGAAGTTTGTTAAGCATCTCC 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3091 CACAGTCATATGTTCTTTTCACATTGGACAAGCTAGTTCAGAAGTTTGTTAAGCATCTCC 3150
Query 404 ATGCGGTTGCATCTGATGAAACAGACACCAAGCTTCTGCAACTACATGCGTATGAGAACT 463
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3151 ATTCGGTTGCATCTGATGAAACAGACACCAAGCTTCTGCAACTACATGCGTATGAGAACT 3210
Query 464 ACAGAAAACCGGGAAAATTCTTTGATATAGTGTATCATGAGAATGCATGTGCCATCCTCC 523
|||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 3211 ACAGAAAACCTGGAAAATTCTTTGATCTAGTGTATCATGAGAATGCATGTGCCCTCCTCC 3270
Query 524 ATGAGGCAAACATATACCAGATCAGATATTCATCAGC-GGAAACACGTCTCTCGATTCAG 582
|||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 3271 ATGAGGCAAACATATACCGGATCAGATATTCATCAGAAGGAA-CACGTCTCTCGATTCAG 3329
Query 583 CTTATGAACAGCGGGAACAATCAGCCTGAAGTAATGGGTGTAGCGA 628
||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 3330 CTTATGAACAGTGGGAACAATCAGCTTGAAGTAATGGGTGTAGCGA 3375
Score = 195 bits (105), Expect = 6e-49
Identities = 144/161 (89%), Gaps = 10/161 (6%)
Strand=Plus/Plus
Query 1 ATGGAGGATGAAGGGAATCATATGGTTA-CGGAAGCATCAGTGGAAAAGCATGAGGTTGA 59
|||||||||||||||||||||||||||| || | ||||| |||||||||||||||
Sbjct 2370 ATGGAGGATGAAGGGAATCATATGGTTAACGCA-GCATCGGTGGAAAAGCATGAG----- 2423
Query 60 GCTAGAAGAGGGTGAATTATCTCC-ACCGCCAGTTGTGAGCAAGGCAATTTTGAGGTTAA 118
||||||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||
Sbjct 2424 -CTAGAAGAGGGTGAATTATCTCCCACCGCCAGTCGTGAGCAAAGCAACTTTGAGGTTAA 2482
Query 119 TGGACAGAATGGCTTCAAGCCTTTACATAAG-TGACGGACA 158
||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 2483 TGGACAGAATGCCTTCAAGCCTTTACAAAAGGTGACGGACA 2523
> AT1G59890.2 | Symbols: SNL5 | SIN3-like 5 | chr1:22043829-22051086
FORWARD LENGTH=4199
Length=4199
Score = 466 bits (252), Expect = 1e-130
Identities = 392/458 (86%), Gaps = 15/458 (3%)
Strand=Plus/Plus
Query 164 TCATCAAATGTTGTACGAGAGAATACAAAACAACAAAGAAACATTCAGAAAAGAAATGGA 223
|||||||||||||||||||||||||| || || |||||| ||||||||| | ||||||||
Sbjct 3029 TCATCAAATGTTGTACGAGAGAATAC-AATCAGCAAAGATACATTCAGAGAGGAAATGGA 3087
Query 224 AGGCTCCAGATAACACGACTCT--TGATTCTTATCCCAGGTTCATGGATGCACTCTATAA 281
| |||||||||| ||| | ||| |||||||||| ||||||||||||| || || || ||
Sbjct 3088 AAGCTCCAGATAGCAC-A-TCTACTGATTCTTATACCAGGTTCATGGAAGCCCTTTACAA 3145
Query 282 TTTACTTGACGGTTCTATTGACAATACCAAGTTTGAAGATGAGTGCCGAGCTATTTTTGG 341
||||||||| || |||| |||||||| |||||||||||||| || ||||||||| | ||
Sbjct 3146 TTTACTTGATGGCTCTAGCGACAATACAAAGTTTGAAGATGAATGTCGAGCTATTATCGG 3205
Query 342 AGCACAGTCATATGTTCTTTTCACATTGGACAAGCTAGTTCAGAAGTTTGTTAAGCATCT 401
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 3206 AGCACAATCATATGTTCTCTTCACATTGGACAAGCTAGTTCAAAAGTTTGTTAAGCATCT 3265
Query 402 CCATGCGGTTGCATCTGATGAAACAGACACCAAGCTTCTGCAACTACATGCGTATGAGAA 461
|| || || ||| ||||||| |||||||||||||||||||| ||| |||| || |||||
Sbjct 3266 TCACGCAGTCGCAGCTGATGAGACAGACACCAAGCTTCTGCAGCTATATGCATACGAGAA 3325
Query 462 CTACAGAAAACCGGGAAAATTCTTTGATATAGTGTATCATGAGAATGCAT-GTGCCATCC 520
|||||||||||| |||| |||||||||||||||||| ||||||||||| | | ||| | |
Sbjct 3326 CTACAGAAAACCAGGAAGATTCTTTGATATAGTGTACCATGAGAATGC-TCGAGCCCTTC 3384
Query 521 TCCATGAGGCA-AACATATACCAG-ATCAGA-TATTCATCAGCGGAAACACGTCTCTCGA 577
||||||| || ||||||||| || || || |||||||| || |||| |||||| ||
Sbjct 3385 TCCATGAT-CAGAACATATAC-AGGATT-GAATATTCATCTGCCCAAACCCGTCTCG-GA 3440
Query 578 -TTCAGCTTATGAACAGCGGGAACAATCAGCCTGAAGT 614
|||| |||||||||||| |||| |||||||||||||
Sbjct 3441 ATTCAACTTATGAACAGCTGGAATGATCAGCCTGAAGT 3478
> AT1G10250.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SIN3-like 6 (TAIR:AT1G10450.1); Has 310 Blast hits
to 310 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa
- 174; Fungi - 23; Plants - 97; Viruses - 0; Other Eukaryotes
- 16 (source: NCBI BLink). | chr1:3360087-3360508 REVERSE
LENGTH=330
Length=330
Score = 457 bits (247), Expect = 7e-128
Identities = 276/289 (96%), Gaps = 5/289 (2%)
Strand=Plus/Plus
Query 259 AGGTTCATGGATGCACTCTATAATTTACTTGACGGTTCTATT---GACAATACCAAGTTT 315
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 41 AGGTTCATGGATGCACTCTATAATTTACTTGACGGTTCTATTGACGACAATACAAAGTTT 100
Query 316 GAAGATGAGTGCCGAGCTATTTTTGGAGCACAGTCATATGTTCTTTTCACATTGGACAAG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 GAAGATGAGTGCCGAGCTATTTTTGGAGCACAGTCATATGTTCTTTTCACATTGGACAAG 160
Query 376 CTAGTTCAGAAGTTTGTTAAGCATCTCCATGCGGTTGCATCTGATGAAACAGACACCAAG 435
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 161 CTAGTTCAGAAGTTTGTTAAGCATCTCCATGCAGTTGCATCTGATGAAACAGACACCAAG 220
Query 436 CTTCTGCAACTACATGCGTATGAGAACTACAGAAAACC--GGGAAAATTCTTTGATATAG 493
||||||||||||||||||||||||||||||||||||| ||||| || |||||| |||
Sbjct 221 CTTCTGCAACTACATGCGTATGAGAACTACAGAAAACTTTGGGAAGATGATTTGATCTAG 280
Query 494 TGTATCATGAGAATGCATGTGCCATCCTCCATGAGGCAAACATATACCA 542
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 281 TGTATCATGAGAATGCATGTGCCATCCTCCATGAGGCAAAGATATACCA 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5