BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334438
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11460.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1013 0.0
AT1G11450.2 | Symbols: | nodulin MtN21 /EamA-like transporter ... 909 0.0
AT1G01070.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 202 5e-51
> AT1G11460.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:3857005-3859268 FORWARD LENGTH=1014
Length=1014
Score = 1013 bits (548), Expect = 0.0
Identities = 622/655 (95%), Gaps = 16/655 (2%)
Strand=Plus/Plus
Query 185 TCGC-CTATATTTTGGAAAGGACTGaaaaaataaaaaGTCTAAAG-ACCCAAGCAGGAAT 242
|||| || |||||| | ||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 368 TCGCTCT-TATTTT-G--AGGACTGAAAAGATAAAAAGTCT-AAGAACCCAAGCAGGAAT 422
Query 243 GATAAAAGTGATGGGAACT-TTAATATGTATAAGTGGAGCTTTGTTCTTGGCATTTTACA 301
||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 423 GATAAAAGTGATGGGAACTATT-ATATGTATAAGTGGAGCTTTGTTCTTAACATTTTACA 481
Query 302 AAGGCCCTCATATATCAAACTCTCACTCTCACCAAGAGGCTCTTTCTCACAAC-A-AA-A 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | || |
Sbjct 482 AAGGCCCTCATATATCAAACTCTCACTCTCACCAAGAGGCTCTTCCTCACAACAACAACA 541
Query 359 GCGATCACAACACCAAA-AATTGGCTTCTTGGATGTCTCTACTTAACCATAGGAACCGTG 417
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GCGATCACAACA-CAAAGAATTGGCTTCTTGGATGTCTCTACTTAACCATAGGAACCGTG 600
Query 418 TTGATATCTCTATGGATTTTGTTTCAAGGGACTTTAAGCATCAAGTACCCTTGCAAATTC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGATATCTCTATGGATTTTGTTTCAAGGGACTTTAAGCATCAAGTACCCTTGCAAATTC 660
Query 478 TCAAGCACTTGTCTCATGTCAATTTTCGCAGCTTTTCAGTGTGCTCTATTGAGTCTCTAC 537
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 661 TCAAGCACTTGTCTCATGTCAATTTTCGCAGCTTTTCAATGTGCTCTATTGAGTCTTTAC 720
Query 538 AAGAGTAGAGATGTTAAAGATTGGATCATCGATGATAGATTTGTGATCGGTGTCATCGTA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGAGTAGAGATGTTAAAGATTGGATCATCGATGATAGATTTGTGATCGGTGTCATCGTA 780
Query 598 TATGCTGGAGTGATAGGACAAGCAATGTCAACGGTATCGGTGACATGGGGAGTAAA-ACA 656
||||||||||||||||||||||||||||| |||||||| ||||||||||| || || | |
Sbjct 781 TATGCTGGAGTGATAGGACAAGCAATGTCGACGGTATCAGTGACATGGGGGGTGAAGA-A 839
Query 657 ATTAGGAGCTGTTTTCGTATCAGCAATTATGCCAATTGCTCTCATTTCGGCTACTCTATT 716
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 840 ATTAGGAGCTGTTTTCGTATCAGCAATTATGCCAATAGCTCTCATTTCGGCTAGTCTATT 899
Query 717 CGATTTCCTAATCTTACACACTCCTTTATACCTCGGAAGTCTGATTGGATCAGTTGGGCC 776
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 900 CGATTTCATAATCTTACACACTCCTTTATACCTCGGAAGTCTGATTGGATCAGTAGGGAC 959
Query 777 AATAATAGGTCTCTACGTGTTCTTGTGGGGTAAGAACAAAGAAATGGAAGCATAA 831
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 960 AATAACAGGTCTCTACGTGTTCTTGTGGGGTAAGAACAAAGATATGGAAGCATAA 1014
Score = 322 bits (174), Expect = 3e-87
Identities = 194/204 (95%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGAGGATATGCGAGGAGAGAAAGTAGTCTCAAAATGGCCACCGATTATAGTAATG 60
||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct 1 ATGGGTGAGGATATGCGAGTAGTGAAAGTAGAATCAAAATGGCCACCGATAATAGTAATG 60
Query 61 TTAATATCTCAAGTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTT 120
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAATATCACAAGTAGCAATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTT 120
Query 121 GGTGTGAACCATATGATCGTTGGTGCTTATCGAATGGCTATTTCCTCTTTCATTCTGGCT 180
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGTGTGAACCATATGATCATTGGTGCTTATCGAATTGCTATTTCCTCTTTCATTCTGGCT 180
Query 181 CCTATCGCCTATATTTTGGAAAGG 204
||||||||||||||||||||||||
Sbjct 181 CCTATCGCCTATATTTTGGAAAGG 204
> AT1G11450.2 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:3853467-3855385 FORWARD LENGTH=1035
Length=1035
Score = 909 bits (492), Expect = 0.0
Identities = 597/647 (92%), Gaps = 9/647 (1%)
Strand=Plus/Plus
Query 185 TCGC-CTATATTTTGGAAAGGACTGaaaaaataaaaaG-TCTAAAGACCCAAGCAGGAAT 242
|||| || |||||| | || ||||| || || ||||| |||||||||||||||||||||
Sbjct 218 TCGCTCT-TATTTT-G--AGAACTGAGAAGAT-AAAAGATCTAAAGACCCAAGCAGGAAT 272
Query 243 GATAAAAGTGATGGGAACTTTAATATGTATAAGTGGAGCTTTGTTCTTGGCATTTTACAA 302
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 273 GATAAAAGTGATGGGAACTCTAATATGTATAAGTGGAGCTTTGTTCTTAACATTTTACAA 332
Query 303 AGGCCCTCATATATCAAACTCTCACTCTCACCAAGAGGCTCTTTCTCACAACAAAAGCGA 362
|||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 333 AGGCCCTCATATATCAAACTCTCACTCTCACCTAGAGGCTCTTCCTCACAACAACAGCGA 392
Query 363 TCACAACACCAAAAATTGGCTTCTTGGATGTCTCTACTTAACCATAGGAACCGTGTTGAT 422
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 393 TCACAACACCAAGAATTGGCTTCTTGGATGTCTCTACTTAGTCATAGGAATCGTGTTGCT 452
Query 423 ATCTCTATGGATTTTGTTTCAAGGGACTTTAAGCATCAAGTACCCTTGCAAATTCTCAAG 482
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 453 ATCTCTATGGATATTGTTTCAAGGGACTTTAAGCATCAAGTATCCTTGCAAATTCTCAAG 512
Query 483 CACTTGTCTCATGTCAATTTTCGCAGCTTTTCAGTGTGCTCTATTGAGTCTCTACAAGAG 542
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 513 CACTTGTCTCATGTCAATTTTCGCAGCTTTTCAATGTGCTCTATTGAGTCTTTACAAGAG 572
Query 543 TAGAGATGTTAAAGATTGGATCATCGATGATAGATTTGTGATCGGTGTCATCGTATATGC 602
|||||| ||||| ||||||||||||| ||| |||||||||| |||||||| |||||||
Sbjct 573 TAGAGACCTTAAACATTGGATCATCGACGATGGATTTGTGATTGGTGTCATAATATATGC 632
Query 603 TGGAGTGATAGGACAAGCAATGTCAACGGTATCGGTGACATGGGGAGTAAAACA-ATTAG 661
|||||||||||||||||||||||| || ||| | | |||||||||| |||| || |||||
Sbjct 633 TGGAGTGATAGGACAAGCAATGTCGACTGTAGCAGCGACATGGGGAATAAA-CAGATTAG 691
Query 662 GAGCTGTTTTCGTATCAGCAATTATGCCAATTGCTCTCATTTCGGCTACTCTATTCGATT 721
|||||||||||| |||||||||||||||| || ||||||| |||||||||||||||||||
Sbjct 692 GAGCTGTTTTCGCATCAGCAATTATGCCAGTTTCTCTCATATCGGCTACTCTATTCGATT 751
Query 722 TCCTAATCTTACACACTCCTTTATACCTCGGAAGTCTGATTGGATCAGTTGGGCCAATAA 781
|||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||
Sbjct 752 TCCTTATCTTACACACTCCTTTATACCTCGGAAGTGTGATTGGATCAGTAGGGACAATAA 811
Query 782 TAGGTCTCTACGTGTTCTTGTGGGGTAAGAACAAAGAAATGGAAGCA 828
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 812 TAGGTCTCTACGTGTTCTTGTGGGGTAAGAACAAAGAAACGGAAGCA 858
Score = 91.6 bits (49), Expect = 1e-17
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 151 CGAATGGCTATTTCCTCTTTCATTCTGGCTCCTATCGCCTATATTTTGGAAAGGA 205
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1 CGAATGGCTATTTCCTCTTTCATTCTGGTTCCTATCGCCTATTTTTTGGAAAGGA 55
> AT1G01070.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:38752-40944 REVERSE LENGTH=1311
Length=1311
Score = 202 bits (109), Expect = 5e-51
Identities = 169/198 (85%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 10 GATATGCGAGGAGAGAAAGTAGTCTCAAAATGGCCACCGATTATAGTAATGTTAATATCT 69
||||||| ||||| || |||||| ||||| ||||| | ||||| ||| | || ||
Sbjct 77 GATATGCAAGGAGTGAGAGTAGTAGAAAAATATTCACCGGTCATAGTGATGGTGATGTC- 135
Query 70 CAA-GTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTTGGTGTGAA 128
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 AAATGTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCTTGATGTTGGTGTGAA 195
Query 129 CCATATGATCGTTGGTGCTTATCGAATGGCTATTTCCTCTTTCATTCTGGCTCC-TATCG 187
||||||| || |||||||||||||||||||||||||| |||| ||| ||| ||| | | |
Sbjct 196 CCATATGGTCATTGGTGCTTATCGAATGGCTATTTCCGCTTTAATTTTGGTTCCCTTT-G 254
Query 188 CCTATATTTTGGAAAGGA 205
||||| | ||||||||||
Sbjct 255 CCTATGTCTTGGAAAGGA 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5