BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg334440

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G11470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...   296    1e-79


> AT1G11470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr1:3859662-3860604 REVERSE LENGTH=747
Length=747

 Score =  296 bits (160),  Expect = 1e-79
 Identities = 249/291 (86%), Gaps = 9/291 (3%)
 Strand=Plus/Plus

Query  270  GGCGGATCTCGTCAGCTCGGCAAAGCAGCTTCTCATGGAAGGCAAACGTCTAGATGCCCT  329
            |||||||||||||||||||||||||||||||  |||||||||||||| | ||||||| ||
Sbjct  227  GGCGGATCTCGTCAGCTCGGCAAAGCAGCTT-ACATGGAAGGCAAACATGTAGATGCTCT  285

Query  330  CCAGATCTTTATGTGGAT-CTATAGAAAGAAGATGATTTTTTCTCCCTCGGAGCTTGCGC  388
            |||||||||||||||||| | |||||||| |||||| ||| ||| |||| ||| |||| |
Sbjct  286  CCAGATCTTTATGTGGATGC-ATAGAAAGGAGATGAGTTTCTCTACCTCTGAGGTTGCAC  344

Query  389  TTTTTGTGGATATCTTTGCTAGGACTATAGGCTTACCTACTGCTCACGCCTACTTGAAGA  448
            | |||||||||||| ||| ||  ||||| ||| || || |||||||| ||||||||||||
Sbjct  345  TCTTTGTGGATATCATTGGTAACACTATCGGCATAGCTGCTGCTCACTCCTACTTGAAGA  404

Query  449  AAGTAGACCCAGACTGCGACCGAATGCACAATCCTACCGAGAATTGGCCTGCTTACGTAG  508
            ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||| |
Sbjct  405  AAGTAGACCCAAACTGCGACCAAATGCACAATCGTACCGAGAATTGGCCTGCTTTCGT-G  463

Query  509  ATCTC-C-TGCTTTTGGATACTGAGCTTTTAGAG-AAACGCGGGATAGTTC  556
             |||| | ||   ||||| ||| |||| ||| || |||  |||||||||||
Sbjct  464  -TCTCTCGTGAAGTTGGAGACTAAGCTGTTAAAGGAAAA-CGGGATAGTTC  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28583229643


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5