BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg334443

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G11500.1 | Symbols:  | Protein of unknown function (DUF1218)...   887    0.0  


> AT1G11500.1 | Symbols:  | Protein of unknown function (DUF1218) 
| chr1:3870833-3871570 FORWARD LENGTH=555
Length=555

 Score =  887 bits (480),  Expect = 0.0
 Identities = 531/556 (96%), Gaps = 2/556 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAAGTGAACTTGGGTTCTTGGTTTCTGTTGTGATCATATGTGCAGACATTACAGCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAAGTGAACTTGGGTTCTTGGTTTCTGTTGTGATCATATGTGCAGACATTACAGCT  60

Query  61   ACAGTCCTCGGGATCGAAGCAGAGATTGCTCAAAGCAAGGCACCTCATCATCATCATCAA  120
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACAGTCCTCGGGATCGAAGCCGAGATTGCTCAAAGCAAGGCACCTCATCATCATCATCAA  120

Query  121  CAGCATTTAAGACATTC-GGATTCTGGATGTCGAAGAAACCCCAGCGCTGAAGCTTTTGC  179
            || |||| ||||||||| || ||||||||||||||||| |||||||| || ||| |||||
Sbjct  121  CAACATTCAAGACATTCAGG-TTCTGGATGTCGAAGAAGCCCCAGCGATGGAGCATTTGC  179

Query  180  TGAGGGAGTAGCTGCAATGGTGCTTCTGTTTATTGTCCATGTCCTAGCCAATGTGCTTGG  239
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  180  TGAGGGAGTAGCTGCAATGGTGCTTCTGTTTATTGTCCATGTCCTAGCTAATGTGCTTGG  239

Query  240  AGGCTGCACTTACATTCGCTCTAAGCAAGATTTCAACAGAGCAACTGCAAACAAGATACT  299
            |||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct  240  AGGCTGCACTTACATTCGCTCTAAGCAAGATTTCAAAAGAGCAACGGCGAACAAGATACT  299

Query  300  CGCTATGGCTTTCCTTGTTCTCTCCTGGATCTTTTTTGGTGTCAGCTACTCAACGCTGAT  359
            |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct  300  CGCTGTGGCTTTCCTTGTTCTCTCCTGGATCTTTTTTGTTGTCAGCTACTCAACGCTAAT  359

Query  360  GATAGGAACATTGGGCAACTCGAGATCGAATCGATTCTGCAGCTTGCAACATCGTTGGTT  419
            |||||||||||| | |||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct  360  GATAGGAACATTAGCCAACTCGAGAACGAATCGACTCTGCAGCTTGCCACATCGTTGGTT  419

Query  420  TTTTCTTATTGGAGGCATATTTTGTCTAGGACATGGAGTGGTGACTTCAGCATATTATGT  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  TTTTCTTATTGGAGGCATATTTTGTCTAGGACATGGAGTGGTGACTTCAGCATATTATGT  479

Query  480  TTCAGCAATTGCTGCTAAAAAAGAAGACAAAGAGAATGCGCAACAAGAAAATCGATCAAA  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  480  TTCAGCAATTGCTGCTAAAAAAGAAGACAAAGAGAATGCGCAACAAGAAAATCTAGCAAA  539

Query  540  CAGAAGCCGTGCATAA  555
             |||||||| ||||||
Sbjct  540  TAGAAGCCGCGCATAA  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5