BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334446
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11540.1 | Symbols: | Sulfite exporter TauE/SafE family pro... 1027 0.0
> AT1G11540.1 | Symbols: | Sulfite exporter TauE/SafE family protein
| chr1:3875442-3877155 REVERSE LENGTH=1320
Length=1320
Score = 1027 bits (556), Expect = 0.0
Identities = 749/840 (89%), Gaps = 21/840 (3%)
Strand=Plus/Plus
Query 62 TTGCAGACCAAAATCAAATCCTCAACGCAACAAGCCAATGGCTCCATTTCCCGCCGAATT 121
|||||||||| | |||||||| || | ||||||||||||||||||||||| || | |
Sbjct 4 TTGCAGACCAGAGTCAAATCCGCAGCACAACAAGCCAATGGCTCCATTTCTCGGAGGACC 63
Query 122 TGAACGAGTCAACTATCAAATTCTCCATTCCAACGATAATCGCCGCCGTTCTCTCATTCT 181
| | | | |||||||| || ||||||| || || |||||||||||||||||||| ||||
Sbjct 64 TCAGCCAATCAACTATTGAAGTCTCCATCCCCACCATAATCGCCGCCGTTCTCTCGTTCT 123
Query 182 TCGCCGCCTCAATCTCCAGCGCC---GG-A-----GGCGGTGCACTCTTCCTCTCAATAA 232
|||||||||| |||||||||||| || | ||||||| |||||||||||| ||||
Sbjct 124 TCGCCGCCTCTATCTCCAGCGCCGGAGGAATCGGCGGCGGTGGACTCTTCCTCTCGATAA 183
Query 233 TGACGA-CAATCTCCGGTCTCGAAATGAAAACAGCTTCGAGCTTCTCAGCGTTCATGATA 291
|||| | | ||| ||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 184 TGACAATC-ATCGCCGGTCTCGAAATGAAAACAGCTTCAAGCTTCTCAGCGTTCATGGTA 242
Query 292 ACCGGAGTCTCCATAGCAAACGTGGGATGCAATCTTTTCGC-CAGAAACCCTAAATCAAG 350
||||| ||||| | || ||||||||||||||||||||| | |||||||||||||||||
Sbjct 243 ACCGGCGTCTCTTTCGCTAACGTGGGATGCAATCTTTTC-CTGAGAAACCCTAAATCAAG 301
Query 351 AGACAAAACATTAATCGATTTCGATTTATCTCTCACTCTTCAGCCATGTCTACTTCTTGG 410
||||||||| ||||||| ||||||||| |||| ||| ||||||||||||||||||| ||
Sbjct 302 AGACAAAACCCTAATCGACTTCGATTTAGCTCTTACTATTCAGCCATGTCTACTTCTCGG 361
Query 411 AGTTAGTATTGGTGTGATATGTAACCGTATGTTCCCAAATTGGCTTGTGTTGTCACTCTT 470
||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 362 AGTAAGTATTGGTGTGATCTGTAACCGTATGTTCCCAAATTGGCTTGTGTTGTTTCTCTT 421
Query 471 CGCTGTGTTCCTCGCCTGGTCAACGATGAAGACATGTAAAAAGGGAGTTTCTTACTGGAA 530
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 422 CGCTGTGTTCCTCGCCTGGTCAACGATGAAGACTTGTAAAAAGGGAGTTTCTTACTGGAA 481
Query 531 TTTGGAGTCGGAAAGAGAGAAGATTAGGAGTCGAAGAGATGATGATAGG-ATCAAGGTAG 589
||||||||||||||||| |||||||| ||||| |||||| | |||| || ||| ||||||
Sbjct 482 TTTGGAGTCGGAAAGAGCGAAGATTAAGAGTCCAAGAGACGTTGAT-GGCATCGAGGTAG 540
Query 590 CGAGATCGCCGCTTCTG-GCT-AATGAAGGAGAAGCTG-AAGTAGAGAGAGGAATGATTA 646
||||||||||||||||| | | || ||| |||||| || || | ||||||| |||||||
Sbjct 541 CGAGATCGCCGCTTCTGAG-TGAA-GAAAGAGAAGATGTGAG-ACAGAGAGGGATGATTA 597
Query 647 GGTTTCCATGGATGAAGCTTGGAGTTTTAGTGATCATTTGGTTAGTGTTCTTCTCTATTA 706
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 GGTTTCCATGGATGAAGCTTGGAGTTTTAGTGATCATTTGGTTATTGTTCTTCTCTATTA 657
Query 707 ATCTTTTTCGTGGAAACAAATACGGTCAGGGAATCATATCGATCAAGCCATGTGGAGGTC 766
||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 ATCTTTTCCGCGGAAACAAATACGGTCAGGGAATCATATCGATCAAGCCATGTGGAGCTC 717
Query 767 TCTACTGGTTCCTCTCGTCGCTTCAAATACCTCTCACTATCTTCTTTACTCTCTGCATTT 826
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCTACTGGTTCCTCTCCTCGCTTCAAATACCTCTCACTATCTTCTTTACTCTCTGCATTT 777
Query 827 GTTTCAATGACAATGTTCAAAGCAACCACACTTCACATAGTAACCAAGACTCTGAAAAGG 886
|||| |||||||||||||||||||||||| || |||||||||||| |||||||| |||
Sbjct 778 ACTTCAGTGACAATGTTCAAAGCAACCACACATCGCATAGTAACCAAAACTCTGAACAGG 837
Score = 267 bits (144), Expect = 2e-70
Identities = 152/156 (97%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 883 AAGGTTATAGCCAAGTATGGGAGGGCTTCGATCATTGTGTTTGCCGTTGGTATCGTCATG 942
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1131 AAGGTTATAGCCAAGTATGGGAGGGCTTCGATCATTGTGTTTGCAGTTGGTATCGTCATG 1190
Query 943 GCACTTAGCACTGTACTGATGACGACCCATGGAGCTCTTAATGTTTGGAATGATTTTGTC 1002
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1191 GCACTTAGCACTGTACTGATGACAACCCATGGAGCTTTTAATGTTTGGAATGATTTTGTC 1250
Query 1003 TCTGGTGGCTACATGGGTTTCAAATTACCCTGTTAA 1038
|||||| |||||||||||||||||||||||||||||
Sbjct 1251 TCTGGTCGCTACATGGGTTTCAAATTACCCTGTTAA 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5