BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334448
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11560.1 | Symbols: | Oligosaccharyltransferase complex/mag... 1456 0.0
AT1G11570.2 | Symbols: NTL | NTF2-like | chr1:3883280-3883956 F... 647 0.0
AT1G61790.1 | Symbols: | Oligosaccharyltransferase complex/mag... 431 1e-119
> AT1G11560.1 | Symbols: | Oligosaccharyltransferase complex/magnesium
transporter family protein | chr1:3881788-3882819 FORWARD
LENGTH=1032
Length=1032
Score = 1456 bits (788), Expect = 0.0
Identities = 946/1022 (93%), Gaps = 12/1022 (1%)
Strand=Plus/Plus
Query 1 ATGGTGATTCATACTAATCTCTCATATCGTTCCTTCCTCTTAATCGCGTTTTTATTTACC 60
||||||||||| || |||||||||||||||| |||| ||||||| | |||||||||||||
Sbjct 1 ATGGTGATTCAAACGAATCTCTCATATCGTTTCTTCATCTTAATTGTGTTTTTATTTACC 60
Query 61 CTAGCGAATCCAGAATCGGATTCAGATCTCATAAACGAGCTTGTTTCGCTCCGATCAGCC 120
|||||||||||| |||| ||||||||||||| |||||| || || || ||||||||| ||
Sbjct 61 CTAGCGAATCCAAAATCAGATTCAGATCTCAAAAACGAACTAGTCTCCCTCCGATCAACC 120
Query 121 GCCGAATCAGGTTTGATTC-CCCTCAACGACGAAGACGTTTCCAAATTCATAACCTCCGT 179
||||||||||| ||| || || ||||| |||| ||||||||||||||||||||||||||
Sbjct 121 GCCGAATCAGGCGTGA-TCTCCTTCAACAACGACGACGTTTCCAAATTCATAACCTCCGT 179
Query 180 AGCCACTCCTAGACCTTACTCTCTCATCATCTTCTTCGACGCAATTCATCTCCACGGCAA 239
| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 180 ATCCACTCCTAGACCTTACTCACTCATCATCTTCTTCGACGCCGTTCATCTCCACGGCAA 239
Query 240 TAGCCAGCTCCGTCTTCCAGAGTTCCGCCGCGAATTCGGACTCGTCTCCGCCACTTTCAT 299
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 TAGCCAGCTACGTCTTCCAGAGTTCCGCCGCGAATTCAGACTCGTCTCCGCCACTTTCAT 299
Query 300 CGCCAACAACAACAATGGAA-CTAACGGAAAAAAGCTCTTCTTCTGCGAGATCGAATCAA 358
| |||||||||||||| ||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 300 CACCAACAACAACAAT-GAATCTAACGGCACAAAGCTCTTCTTCTGCGAGATCGAATCAA 358
Query 359 CTCACTCTGTGGCTTCGTTCCAG-CGCTTCGCCGTCGAG-AATCTACCGCACATTTCCCT 416
||||||| | |||||| |||| | ||||||||||||||| | ||||| |||||||||||
Sbjct 359 CTCACTCCGAGGCTTCTTTCC-GCCGCTTCGCCGTCGAGTCA-CTACCACACATTTCCCT 416
Query 417 CGTTAGCCCTATGACGGAGAATTTAACAGAATCAGATCAAATGGACGGTGGAGATTTCAC 476
||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGTTAGCCCCACGACAGAGAATTTAACAGAATCAGATCAAATGGACGGTGGAGATTTCAC 476
Query 477 TGGATTAGCCGAATCAATGGCAGAGTTCGTCGAACGTTTAACCAAACTCACTGTTGGTCC 536
||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| || |
Sbjct 477 TGGATTAGCCGAATCAATGGCAGAGTTCGTCGAACGTCAAACAAAACTCACCGTTTGTTC 536
Query 537 AATCCAACGACCGCCGCTCCTATCGAAGACACAAATCGGAATCATAGTAGCAT-TTCTCA 595
|||||||||||| || ||| |||| |||||||||||||||||||| || || | | |||
Sbjct 537 AATCCAACGACCACCACTCATATCAAAGACACAAATCGGAATCATCGTTGC-TATAATCA 595
Query 596 TAATCTCGACTCCGATTCTAATCAAGAAGATTCTAAAAGGAGAAACGCTTCTCCATGACC 655
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 596 TAATCTCGACTCCGATTCTCATCAAGAAGATTCTAAAAGGAGAAACACTTCTCCATGACC 655
Query 656 GTAGAATCTGGTTAGTCGGCGCGGTTTTCGTCTACTTCTTCAGCGTCTCGGGGACAATGC 715
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ATAGAATCTGGTTAGTTGGCGCGGTTTTCGTCTACTTCTTCAGCGTCTCGGGGACAATGC 715
Query 716 ATAACATTATTAGAGAAATGCCAATGTATATCAAAGATTATGAAGATTCAAATAAGTTTG 775
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 716 ATAACATCATTAGAGAAATGCCAATGTATATCAAAGATTATGAAGATTCAAGTAAGTTTG 775
Query 776 TTTTCTTTATCGAAGAATCAGAGATGCAGCTTGGAGCAGAAGGTTTCTTTGTAGGGTTTT 835
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTTTCTTTATAGAAGAATCAGAGATGCAGCTTGGAGCAGAAGGTTTCTTTGTAGGGTTTT 835
Query 836 TGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACTAATGT-GCTTGTTCGAGTTAAG 894
||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||
Sbjct 836 TGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACTAATGTAG-TTGTACGAGTCAAG 894
Query 895 AAACTCGAAGAGCAGAGGATGGCTATGCTTTTGTCTCTGTCGATATCGTTTTGGGCTGTG 954
|||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 895 AAACTCGATGAGCAAAGGATGGCTATGCTTTTGGCTCTGTCTATATCGTTTTGGGCTGTG 954
Query 955 AGGAAAGTTGTTTACTTGGATAATTGGAAGACTGGATATGAAATTTACCCATATTGGCCA 1014
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 955 AGGAAAGTTGTTTACTTGGATAATTGGAAGACTGGTTATGAAATTTACCCATATTGGCCA 1014
Query 1015 TC 1016
||
Sbjct 1015 TC 1016
> AT1G11570.2 | Symbols: NTL | NTF2-like | chr1:3883280-3883956
FORWARD LENGTH=399
Length=399
Score = 647 bits (350), Expect = 0.0
Identities = 378/392 (96%), Gaps = 0/392 (0%)
Strand=Plus/Plus
Query 1019 AGACAAATAAAGGAATTGAAGAAGAAGTGGCAAGTGCTTTTGTGAATCACTACTACCATA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 AGACAAATAAAGGAATTGAAGAAGAAGTGGCAAGTGCTTTTGTGAATCACTACTACCATC 67
Query 1079 TCTTTGACAACGATCGATCATCTCTTTCTTCTCTCTATAATCCCACCTCGTTGCTCACTT 1138
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 68 TCTTTGACAACGATCGATCATCGCTTTCTTCTCTCTACAATCCCACCTCTTTGCTCACTT 127
Query 1139 TTGAAGGCCAAAAGATTTACGGCGTGGAAAACATCTCCAATAAGCTTAAACAACTTCCGT 1198
|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 128 TTGAAGGCCAAACGATCTACGGCGTGGATAACATCTCCAATAAGCTTAAACAACTTCCGT 187
Query 1199 TCGATCAATGCCGTCATTTGATCAGCACCGTCGATTCTCAGCCGTCTTCAATAGCCGGTG 1258
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 188 TCGATCAATGCCATCATTTGATCAGCACCGTCGATTCTCAGCCGTCTTCAATGGCCGGTG 247
Query 1259 GATGTGGCGGAATCCTAGTTTTTGTGAGCGGTAGCCTCCAATTACATGGGGAGGATCATC 1318
||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 248 GATGTGGTGGAATCCTAGTTTTTGTGAGCGGTAGCATCCAATTACATGGAGAGGATCATC 307
Query 1319 CTCTTAGGTTTAGCCAGACGTTTCACTTGATTCCGGTTCTACAAGGAAGTTTCTTCGTCC 1378
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 308 CTCTTAGGTTTAGCCAGACGTTTCACTTGATTCCGGTTCTGCAAGGAAGTTTCTTCGTCC 367
Query 1379 AAAATGAGATGTTTCGGCTCAATTATGGTTGA 1410
|||||||||||||||||||||| |||||||||
Sbjct 368 AAAATGAGATGTTTCGGCTCAACTATGGTTGA 399
> AT1G61790.1 | Symbols: | Oligosaccharyltransferase complex/magnesium
transporter family protein | chr1:22814390-22815430
FORWARD LENGTH=1041
Length=1041
Score = 431 bits (233), Expect = 1e-119
Identities = 735/970 (76%), Gaps = 64/970 (7%)
Strand=Plus/Plus
Query 79 GATTCAGATC-TCATAAACGAGCTTGTTTCGCTCCGATCAGC-CGCCGAATCAGGTTTGA 136
|||||||||| || | ||||| ||||| || ||| ||||| | | ||||||||| | |
Sbjct 91 GATTCAGATCTTC-TCAACGAACTTGTATCTCTCAGATCAACAAG-CGAATCAGGCGT-A 147
Query 137 TTCC-CCTCAACGACGA-AGACGTTTCCAAATTCATAACCTCCG-TAGCCACTCCTAGAC 193
||| ||| | ||| | || | || |||||| ||||||||| | |||| ||| | |
Sbjct 148 ATCCATCTCGATGACCATGGA-ATCTCAAAATTCCTAACCTCCGCT-TCCACGCCTCGTC 205
Query 194 CTTACTCTCTCA-TCATCTTCTTCGACGCAATTCATCTCCACGGCAATAGCCAGCTCCGT 252
||||||| | | || ||||||||||||| | ||| |||||| |||| | | |||| |||
Sbjct 206 CTTACTC-GTTACTCGTCTTCTTCGACGCTACTCAACTCCACAGCAAAAACGAGCTTCGT 264
Query 253 CTTCCAGAGTTCCGCCGCGAATTCGGAC-TCGTCTCCGCCACTTTCATCGCCAACAACAA 311
|||| |||| |||| ||||||||||| | |||||||||| | ||| ||| | |||||
Sbjct 265 CTTCAAGAGCTCCGTCGCGAATTCGG-CATCGTCTCCGCTTCATTCCTCG-C--TAACAA 320
Query 312 CAATGGAACT-AACGGAAAAAAGCTCTTCTTCTGCGAGATCGAATCAACTCACTCTGTGG 370
||||||| || || |||| ||||| |||||||| |||||||| | | | |||
Sbjct 321 CAATGGATCTGAA-GGAACTAAGCTTTTCTTCTGTGAGATCGAGTTTTCGAAGTCTCAAT 379
Query 371 CTTCGTTCCAGCGCTTCGCCGTCGA-GAATCTACCGCACATTTC-CCTCGTTAGCCCTAT 428
|||||||||||| ||| | ||| | | | |||| |||| ||| || || || ||| |
Sbjct 380 CTTCGTTCCAGCTCTTTGGCGTTAACG-CTTTACCTCACA-TTCGTCTTGTAAGTCCT-T 436
Query 429 -GACGGAGAATTTAAC---A-GAATCAGATCAAATGGA-CGGTGGAGATTTCACTGGATT 482
|| |||| | || | ||||| | ||||||||| | | | |||| | || ||||
Sbjct 437 CGATATCGAATCT-ACGTGATGAATCTGGTCAAATGGATCAATCG-GATTACTCTAGATT 494
Query 483 AGCCGAATCAATGGCAGAGTTCGTCGAACGTTTAACCAAACTCACTGTTGGTCCAATCCA 542
||| ||||||||||| ||||| || || | ||| ||||||| || ||||| || ||
Sbjct 495 AGCTGAATCAATGGCTGAGTTTGTTGAGCAACGAACTAAACTCAAGGTCGGTCCTATTCA 554
Query 543 ACGACCGCCGCTCCTATCGAAGA-CACAAATCGGAATCATAGTAGCATTTCTCATAATCT 601
||| || ||||| || ||||| | |||| ||||| || || || || || || | |||
Sbjct 555 ACGTCCACCGCTACTTTCGAA-ACCACAGATCGGTATTATCGTTGCGTTGATCGTTATCG 613
Query 602 CGACTCCGATTCTAATCAAGAAGA-TTCTAAAAGGAGAAACGCTTCTCCATGA-CCGTAG 659
| |||||| || | ||||| |||| || | ||||||||||| |||| ||||| | |||
Sbjct 614 CTACTCCGTTTATCATCAA-AAGAGTTTTGAAAGGAGAAACTATTCTTCATGATAC-TAG 671
Query 660 AATCTGGTTAGTC-GGCGCGGTTTTCGTCTACTTCTTCAGCGTCT-CGGGGACAATGCAT 717
| | |||||| || || || | ||| | |||||||| || || | | || ||||||||
Sbjct 672 ACTTTGGTTA-TCTGGTGCTATCTTCATTTACTTCTTTAGTGT-TGCTGGTACAATGCAC 729
Query 718 AACATTATTA-GAGAAATGCCAATGTAT-ATCAAAGATTATGAA-GATTCAAATAAG-TT 773
|||||||| | || ||||||| |||| | || ||||| | || ||| | |||||| ||
Sbjct 730 AACATTATCAGGA-AAATGCCGATGTTTCTTC-AAGATCGT-AACGATCCGAATAAGCTT 786
Query 774 -TGTTTTCTTTATCGAAGAATC-AGAGATGCAGCTTGGAGCAGAAGG-TTTCTTTGTAGG 830
|||||| | || | ||| ||| || |||||||||||||| ||||| ||| ||| ||
Sbjct 787 GTGTTTT-TCTA-CCAAGGATCTGGA-ATGCAGCTTGGAGCTGAAGGATTT-GCTGTTGG 842
Query 831 GTTTTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACTAATGTGCTTGTTCGAGT 890
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 843 ATTCTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGTGCTTGTTCGAGT 902
Query 891 TAAGAA-ACT-C-GAAGAGCAGAGGATGGCTATGCTTTTGTCTCTGT-CGATATCGTTTT 946
||||| | | | | | | | ||| || |||||||||| || ||| | |||||||| |
Sbjct 903 GAAGAATATTACTGCACA--A-AGGTTGATTATGCTTTTGGCTTTGTTC-ATATCGTTCT 958
Query 947 GGGCTGTGAGGAAAGTTGTTTACTTGGATAATTGGAAGACTGGATATGAAATTTACCCAT 1006
||||||||| ||||||||||||||||||||| |||||||||||||||| |||| | || |
Sbjct 959 GGGCTGTGAAGAAAGTTGTTTACTTGGATAACTGGAAGACTGGATATGGAATTCATCCGT 1018
Query 1007 ATTGGCCATC 1016
||||||||||
Sbjct 1019 ATTGGCCATC 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5