BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334454
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11620.1 | Symbols: | F-box and associated interaction doma... 1567 0.0
AT1G31510.1 | Symbols: | F-box associated ubiquitination effec... 215 1e-54
> AT1G11620.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:3910833-3911924 FORWARD LENGTH=1092
Length=1092
Score = 1567 bits (848), Expect = 0.0
Identities = 1015/1092 (93%), Gaps = 25/1092 (2%)
Strand=Plus/Plus
Query 1 ATGGCTACTATGGAGCTTTCGTCTGATTTGGTAGAGGAGATACTATCACGGATTCCAGCT 60
|||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1 ATGGCTACAATGGATCTTTCGTCTGATTTGGTAGAGGAGATACTCTCACGGGTTCCAGCG 60
Query 61 AGATCTCTTGTACGATTGAAATCCACATGCAAGCAGTGGAAAACCCTAATCACAGAGCCG 120
||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||
Sbjct 61 AGATCTCTTGTACGATTGAGATCCACATGCAAGCAGTGGGAAGCCCTAATCGCAGAGCCG 120
Query 121 AGATTCGTGAACAAGCACTTGTCTCACATGCGTTGCCGTGAGCAACAATTCACAGTCTTT 180
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGATTCGTCAACAAGCACTTGTCTCACATGCGTTACCGTGAGCAACAATTCACAGTCTTT 180
Query 181 AACAACGAACACATAGTTTCTCCTTTATTCGGTTCCACAATTTCTTATGTAGGTATCGAT 240
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 181 AACAACGAACACATAGTTTCTCCTTTGTTCGGTTCCACAACTTCTTATGTAGGTATCGAT 240
Query 241 TTCAACAAACCAGAAAAATGTGGTATGAATTTGCCGTTTCCAATAGCT-TTCTCACCCGC 299
||||||||||||||||| |||||| |||| ||||| |||||||||||| || ||||| ||
Sbjct 241 TTCAACAAACCAGAAAATTGTGGTGTGAAATTGCCTTTTCCAATAGCTCTT-TCACCAGC 299
Query 300 GAACAATATTTCTCATTGTGATGGTCTATTGCTATACGTCACTAAAAGTATGCTTTTGGT 359
|| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATCAATATATCTCATTGTGACGGTCTATTGCTATACGTCACTAAAAGTATGCTTTTGGT 359
Query 360 TGCGAATCCGTTGTTGAATCAAAAGAGATGGATCAAATGTAGCCAAGGATTTGACCATTC 419
||||||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 360 TGCGAATCCGTTGTTGAGTCAAAAGAGATGGATTAAATGTAGCGAAGGGTTTGACCATTC 419
Query 420 CATGGATGCGTATGGTCTTGGATACATTTTTAACCAATTATCAGGTTCTTATGATTACAA 479
|||||| |||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 420 CATGGACGCGTATGGTCTTGGATACCTTTTTAACCAATCATCAGGTTTTTATGATTACAA 479
Query 480 AGTGGTAACG-TTTCGTTGTGGTGTCAGAATTAAAGATTTATATCCATCATCAAGAGTTG 538
||| |||| | ||||| | | ||| ||||| || | | || |||||||| || |
Sbjct 480 AGTTGTAA-GATTTCG-T-T-GTG---GAATT-AA-A---A-AT---TCATCAAGGGTAG 523
Query 539 AAGTCTACGCATTCGAA-TCTGATTCTTGGAAGGTTGTTGTTGATAAAAACTTTGATGGG 597
|||||||||||||| || |||||||||||||||||||||||||||| |||||||| |||
Sbjct 524 AAGTCTACGCATTC-AAGTCTGATTCTTGGAAGGTTGTTGTTGATACAAACTTTGGTGGA 582
Query 598 TTCGATGGATTTCCATTGTCAAGTGTTTGTTTGCGAGGAACTCCTTATTGGCTAGGTTAC 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TTCGATGGATTGCCATTGTCAAGTGTTTGTTTGCGAGGAACTCCTTATTGGCTAGGTTAC 642
Query 658 AATAAATATGGTAATCAACTCATGTCGATACAGAGTTTCGATTTCTCAAAAGAGAGATTT 717
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 AATAAATCTGGTAATGAACTCATGTCGATACAGAGTTTCGATTTCTCAAAAGAGAGATTT 702
Query 718 GAGCCCTTGTTTCTTCCTCCTCCATCCATTGGGTCACGTAATTTGGTAAAGTATATCTCT 777
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 703 GAGCCCTTGTTTCTTCCTCCTCAATCCATTGGGTCACGTAATTTGGTAAAGTATATCTCT 762
Query 778 TTAGGGATTTTCAGAGGAGATCAACTTTCTTTGTTACTTGAATGCCACGAAACAAGTAAG 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 763 TTAGGGATTTTCAGAGGAGATCAACTTTCTTTGTTACTTGAATGCCACGAAACATGTAAG 822
Query 838 TTACACTTATGGGTGATGAAGCAGCAGCATTGGAGCAGGCTGATGACAGTTGATGTACCT 897
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 823 TTACACTTATGGGTGATGAAGAAGCAGCATTGGAGCAGGCTGATGACAGTTGATGTACCT 882
Query 898 CA-GTATCCGATATATGGTAAATATTTCAGTTCTTTCATTGAGAGAAATGGTAGGCTTGC 956
|| | || |||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 883 CAAG-ATGCGATATATGGAAAATATTTCAGTTCCTTCATTGAGAGAAATGGTAGGCTTGC 941
Query 957 ATTATTTATCGAAAGCGGGAATATTAGCATCTACATTGGGGGAGAGAATCAAGATTTCGA 1016
|||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 942 ATTATTGATCAAAAGCAGGAATATTAGCATCTACATTGGGGGAGAGAATCAAGAATTC-A 1000
Query 1017 AAAAATT-GAATACTTCACTGGTCTAGGTCGCACGCTCAGTGATTGCTGCTATATTCAGA 1075
||| ||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 1001 AAAGATTTGAATACTTCACTGGTCTTGGTCCCATGCTCAGTGATTGCTGCTATATTCAGA 1060
Query 1076 GCTTGCTTCAGA 1087
||||||||||||
Sbjct 1061 GCTTGCTTCAGA 1072
> AT1G31510.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:11277417-11278462 FORWARD LENGTH=930
Length=930
Score = 215 bits (116), Expect = 1e-54
Identities = 416/548 (76%), Gaps = 72/548 (13%)
Strand=Plus/Plus
Query 302 ACAATAT-TTCTCATTGTGATGGTCTATTGCT-ATACGTCACT-AAAAGTATGCTTTTGG 358
|||| || || ||||||||||||||||||||| || |||| | || | |||| |
Sbjct 170 ACAACATGTT-TCATTGTGATGGTCTATTGCTAAT-GGTCA-TGGGAACCAAAATTTTAG 226
Query 359 TTGCGAATCCGTTGTTGAATCAAAAG--AGATGGATCAAATGTAGCCA-AG----GA-TT 410
|| | |||||||||||||| | ||| ||||||||||||||| || | || || ||
Sbjct 227 TTTCCAATCCGTTGTTGAA--AGAAGCAAGATGGATCAAATGTGGCTATAGCTTTGAGTT 284
Query 411 TGACCATTCCATGGATGCGTATGGTCTTGGATACATTTTTAACCAATTATC-A--GGTTC 467
|||||||||||| ||||| |||||||||||||||||| |||| | | | | | ||||
Sbjct 285 TGACCATTCCATCGATGCATATGGTCTTGGATACATTAGTAACGAGTCACCAAGTGGTTG 344
Query 468 TTATGATTACAAAGTGGTAACGTTTCGTTGTGGTGTCAGAATTAAAGATTTATATCCATC 527
| ||||||||||| |||| | ||||| |||||| | | | || || |
Sbjct 345 TAATGATTACAAAATGGTTAGGTTTC-----GGTGTC----CT--A-A--TA-AT---T- 385
Query 528 ATCAAGAGTTGAAGTCTACGCA-TTCGAATCTGATTCTTGGAA-G--GTTGTTGTTGATA 583
| ||| |||||| |||||| | ||| ||||||||| |||||| | |||||||||||||
Sbjct 386 -T-AAGTGTTGAAATCTACG-ATTTCAAATCTGATTGTTGGAAGGTTGTTGTTGTTGATA 442
Query 584 AAAACTTTGATGGGTTCGATGGATTTCCATTGTCAAGTGTTTGT-TTGCGAGGAACTCCT 642
||| ||| |||||||| | || | |||||||||||||| ||| | | |||||||||||
Sbjct 443 AAACCTTCCATGGGTTCTTTCGACTACCATTGTCAAGTGTGTGTATAG-GAGGAACTCCT 501
Query 643 TATTGGCTAGGTTACAATAAATATGGTAATCAACTCATGTCGATACAGAGTTTCGATTTC 702
|||||| ||||||| |||| || || | || | | |||||||| ||||||||||||
Sbjct 502 TATTGGATAGGTTATAATATCTACGG---T--AC-CGTTTCGATACAAAGTTTCGATTTC 555
Query 703 TCAAAAGAGAGATTTGAGCCCTTGTT----TCT-TCC-TC-CTCCATCCATTGGG-TCAC 754
|||||||||||||||||| ||||||| ||| | | || ||| |||||| ||| || |
Sbjct 556 TCAAAAGAGAGATTTGAGACCTTGTTCGAGTCTCTTCATCACTC-ATCCATCGGGATC-C 613
Query 755 GTAATTTGGTAAAGTATA-TCT--CTTTAGGGATTTTCAGAGGAGATCAACTTTCTTTGT 811
| | || |||| || ||| |||||||||||||| | |||||||| ||||||||||
Sbjct 614 --AGT--GG-AAAG-ATTCTCTTTCTTTAGGGATTTTCCGTGGAGATCATCTTTCTTTGT 667
Query 812 TACTTGAA 819
||| ||||
Sbjct 668 TACGTGAA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5