BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334480
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11905.1 | Symbols: | B-cell receptor-associated protein 31... 1109 0.0
> AT1G11905.1 | Symbols: | B-cell receptor-associated protein
31-like | chr1:4014847-4016540 FORWARD LENGTH=1095
Length=1095
Score = 1109 bits (600), Expect = 0.0
Identities = 644/666 (97%), Gaps = 0/666 (0%)
Strand=Plus/Plus
Query 1 ATGCAGCAATTACTGTTCGCTGTTGTTCTCTTCGAGGTTGTTGTGATAATGGCGCTTTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 ATGCAGCAATTACTGTTCGCTGTTGTTCTCTTCGAGGTTGTTGTGATAATGGCGCTTTCC 171
Query 61 TTTAAGACGCCGATGAGGAAGCTCTTGATCATGAGCTTGGATCGTTCGAAGCGTGGTCGT 120
|| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 172 TTCAAGACGCCGATTAGGAAGCTGTTGATTATGAGCTTGGATCGTTCCAAGCGTGGTCGT 231
Query 121 GGACCGGTGGTGATTCAGACGGTTTCGGCGACGGTTATTGTGCTTCTGGTGACGAGCGTG 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 232 GGACCGGTGGTGATTCAGACGGTTTCTGCGACGGTTATTGTGCTTCTGGTGACGAGCGTG 291
Query 181 TACAATATGATGGGGATCCAGAAGCGTTGGATCGAAGACGGTGTAGTGAACCCTACAGAT 240
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 292 TACAATATGATGGGGATCCAGAAGCGTTGGATCGAAGATGGTGTAGTGAATCCTACAGAT 351
Query 241 GAGGTTATAATGGCTAAGCATCTCCTTGAATCGACTCTTATGGGTGGTTTTCTATTCCTT 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GAGGTTATCATGGCTAAGCATCTCCTTGAATCGACTCTTATGGGTGGTTTTCTATTCCTT 411
Query 301 GGGCTAATGATAGATAGGCTGCATCATTACATGAGAGAACTACGCATAAGAAGGAAGAAC 360
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 412 GGGCTAATGATAGACAGGCTGCATCATTACATGAGGGAGCTACGCATAAGAAGGAAGAAC 471
Query 361 ATGGAAGTTATAAAGAAGGAAGGAGCATTATTGGAAGGTGTAAAGGCCAGAGGTTTAGAT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 472 ATGGAAGTTATAAAGAAGGAAGGAGCATTATTGGAAGGTGTTAAGGCCAGAGGTTTAGAT 531
Query 421 GAAGTTAAAAACTTGATGGAAGAAATTACGTCGCTTCGGAAAAGGCAAGAGCAGCTGGAC 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 532 GAAGTTAAAAACTTGATGGAAGAAATTACGTCCCTTCGGAAAAGGCAAGAGCAGCTGGAC 591
Query 481 TCTGAGCTTGAGGCAAGGTCTAAAGAGATTCGTACCGAGAGAACCAGTGCAGTTGCTCTA 540
|||||||||||||||||||||||||| || |||||||||| ||| ||||| |||||||||
Sbjct 592 TCTGAGCTTGAGGCAAGGTCTAAAGAAATCCGTACCGAGAAAACTAGTGCGGTTGCTCTA 651
Query 541 CAAAAGCAATCTGAAGGGTTCCTTATTGAGTTTAACCGGTTGCTTGAGGAAAACCAGGTT 600
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CAGAAGCAATCTGAAGGGTTCCTTATTGAGTTTAACCGGTTGCTTGAGGAAAACCAGGTG 711
Query 601 CTGCGAGACCAATTGCACGCTGTGGATTCGAAACTTTCGCGTTCAAGCAGCAAAAAGAAT 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CTGCGAGACCAATTGCACACTGTGGATTCGAAACTTTCGCGTTCAAGCAGCAAAAAGAAT 771
Query 661 ACTTGA 666
||||||
Sbjct 772 ACTTGA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5