BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg334493

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13410.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   324    6e-88


> AT3G13410.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant 
structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G55546.1); 
Has 49 Blast hits to 49 proteins in 14 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; 
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | 
chr3:4361857-4364262 REVERSE LENGTH=1402
Length=1402

 Score =  324 bits (175),  Expect = 6e-88
 Identities = 194/203 (96%), Gaps = 2/203 (1%)
 Strand=Plus/Plus

Query  250  AATCTGTTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCGTC-AGAGGA  308
            ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  493  AATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGC-TCCAGAGGA  551

Query  309  AGAAAGGATGGAGAATTTGTTGCTATCAGGACTTAAAGAAGCTTGCCCCAACAATGTTGG  368
            ||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| ||
Sbjct  552  AGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAAGCTTGTCCCAACAATGTAGG  611

Query  369  AGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGCATGGAACAATTCAGAAACT  428
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  612  AGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAGAAACT  671

Query  429  TTCAGACTTGCAGTCTTTCAAAG  451
            |||||||||||||||||||||||
Sbjct  672  TTCAGACTTGCAGTCTTTCAAAG  694


 Score =  302 bits (163),  Expect = 3e-81
 Identities = 180/188 (96%), Gaps = 1/188 (1%)
 Strand=Plus/Plus

Query  1    ATGTCTGCAAAGGATCTAGTAGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTTCTG  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  310  ATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTTCTG  369

Query  61   TTCTCAGAGAAGAAGCTTGAGCAACGTGTTGATGTTGCACTTGTGTTCATAGGCAGAGAG  120
            | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  370  TGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGCAGAGAG  429

Query  121  TTACTGTCTTCTGATGTTTCTTCTAAAAGGAACTCGGATTCTGCCCTTGTTAACACATTG  180
            ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct  430  TTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCTGCCCTTGTTAACACATTG  489

Query  181  AGTA-TCT  187
            | || |||
Sbjct  490  AATAATCT  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5