BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334500
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12070.1 | Symbols: | Immunoglobulin E-set superfamily prot... 1055 0.0
AT5G28080.2 | Symbols: WNK9 | Protein kinase superfamily protei... 52.8 4e-06
> AT1G12070.1 | Symbols: | Immunoglobulin E-set superfamily protein
| chr1:4078913-4080106 REVERSE LENGTH=672
Length=672
Score = 1055 bits (571), Expect = 0.0
Identities = 640/673 (95%), Gaps = 5/673 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTTGAAAGATGA-G-GA-GAAAGCTGGAGAGTCTTCAGAAGACCCAAAGGGGCAA 57
||||||||||| ||||| | || |||||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGTTTTGAACGATGAGGAGATGAAAGCTGGAGAGTCTTCAGAAGAGCCAAAGGGACAA 60
Query 58 GGGTTAAGCAGGAAAAACAGCCATAGCTCTATGTGTCCGACAGATGATGATGAAGAAGAA 117
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGGCTAAGCAGGAAAAATAGCCATAGCTCTATGTGTCCGACAGATGATGATGAAGAAGAA 120
Query 118 GAAGATAAGAAACTTGAACTTGGTCCCATGATTGCTCTTAAAGAACAGCTCGAGAAAGAC 177
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAGACAAGAAACTCGAACTTGGTCCCATGATTGCTCTTAAAGAACAGCTCGAGAAAGAC 180
Query 178 AAGGATGATGAAAGCTTGAGGAGATGGAAGGAGCAACTTCTAGGCAGCGTGGATCTTGAG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGGATGATGAAAGCTTGAGGAGATGGAAGGAGCAACTTCTAGGCAGCGTGGATCTTGAG 240
Query 238 GAGGTCGGAGAAACTCCGGATCCGGC-GGTAAAGATACTGACCTTAACAATTAGGTCACC 296
||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 241 GAGGTCGGAGAGACTCCGGATCCA-CTGGTAAAGATACTAACCTTAACAATTAGGTCACC 299
Query 297 GGATAGAGAAGACATGGTATTAACTATACCTGAAAACGGAAAACCGACTTCGAAAGGACC 356
|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 300 GGATAGAGAAGACATGGTATTAACGATCCCTGAAAACGGAAAACCGGCTTCGAAAGGACC 359
Query 357 ATGGTTCACTCTCAAAGAAGGCTCTAAGTACACTCTCATATTTACTTTCCGTGTCACCAA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATGGTTCACTCTCAAAGAAGGCTCTAAGTACACTCTCATATTTACTTTCCGTGTCACCAA 419
Query 417 CAACATTGTGTCCGGGCTCCGGTACAGCAATACAGTTTGGAAGACCGGAATCAAGGTGTA 476
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAACATTGTGTCCGGCCTCCAATACAGCAATACAGTTTGGAAGACCGGAATCAAGGTGTA 479
Query 477 TAGTAGGAAGGAGATGTTAGGAACGTTTAGTCCACAGGCGGAACCGTACAATCATGTCAT 536
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 480 TAGTAGAAAGGAGATGTTAGGAACGTTTAGTCCACAGGCGGAACCGTACACTCATGTTAT 539
Query 537 GTTTGAAGAGACGGCGCCTTCTGGTCTGCTTGTTAGAGGCTCCTATTCTGTTAAATCTAA 596
||||||||||||||| || |||||||| || ||||||||||| |||||||||||||||||
Sbjct 540 GTTTGAAGAGACGGCACCCTCTGGTCTACTCGTTAGAGGCTCTTATTCTGTTAAATCTAA 599
Query 597 GTTCGTCGATGACGATGATAAGTGCTACTTGGAGAACAACTACACCTTCGACATTCGCAA 656
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTCGTCGATGATGATAATCAGTGCTACTTGGAGAACAACTACACCTTCGACATTCGCAA 659
Query 657 GAATTGGCTGTGA 669
||||||||||||
Sbjct 660 AAATTGGCTGTGA 672
> AT5G28080.2 | Symbols: WNK9 | Protein kinase superfamily protein
| chr5:10090070-10092402 REVERSE LENGTH=1636
Length=1636
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 100 GATGATGATGAAGAAGAAGAAGATAAGA 127
||||||||||||||||||||||||||||
Sbjct 1055 GATGATGATGAAGAAGAAGAAGATAAGA 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5