BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334590
Length=1692
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12850.1 | Symbols: | Phosphoglycerate mutase family protei... 1814 0.0
AT1G12845.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 638 0.0
> AT1G12850.1 | Symbols: | Phosphoglycerate mutase family protein
| chr1:4379707-4381612 REVERSE LENGTH=1568
Length=1568
Score = 1814 bits (982), Expect = 0.0
Identities = 1115/1177 (95%), Gaps = 17/1177 (1%)
Strand=Plus/Plus
Query 1 ATGGGGTCGTCACAGTCTTCGCAAATACT---tgatgatgaagaagatg-a-a-gaagca 54
|||||||| ||||||||||||||| |||| ||| || |||||||| | | | ||||||
Sbjct 36 ATGGGGTCATCACAGTCTTCGCAATTACTCGATGAAGAAGAAGAAGAAGAAGATGAAGCA 95
Query 55 gagagcgaaggtgaag-a--agaagaagaggaagaTGTTA--A-TG-GCGGATTGAACAA 107
|||||||||||||||| | ||||||||| ||||||| | | | ||| |||||| ||
Sbjct 96 GAGAGCGAAGGTGAAGAAGTAGAAGAAGAAGAAGATG-AAGCAGAGAGCGAATTGAATAA 154
Query 108 CAGAAGAATCGAGCTGGATAATCTCTTGGTCAAGAAGGTTCTTGAGCAAGAGCCTGAGAT 167
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 155 CAGAAGAATCGAGCTGGATAATCTCTTGGTCAAGAAAGTTCTCGAGCAAGAGCCTGAGAT 214
Query 168 GCTTCCTTGTCACGCctctgcttctccactctctcctcagctctcttctcttggaactcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GCTTCCTTGTCACGCCTCTGCTTCTCCACTCTCTCCTCAGCTCTCTTCTCTTGGAACTCC 274
Query 228 tcGAATCGGACCTTCCATCAAAGTCTGGGACCCTTATAACGtcctcgcg---cctcctcc 284
|||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||
Sbjct 275 TCGAATCGGACCTTCCATTAAAGTCTGGGATCCTTACAACGTCCTCGCGCCACCTCCTCC 334
Query 285 ttcttctccgcctctcttctctcgtatctccgccgccgcGGAACACGATCGCTCCGCCGT 344
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 335 TTCTTCTCCGCCTCTTTTCTCTCGTATCTCCTCCGCCGCGGAACACGATCGCTCCGCCGT 394
Query 345 AACCGAAGTCTATTTCATCAGCCATGGCGAGTGTGATCTCAATCTCAGGCCTGATCTGAT 404
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 395 GACGGAAGTCTATTTCATCAGCCACGGCGAGTGTGATCTCAATCTCAGGCCTGATCTGAT 454
Query 405 TGGAGGTAGATGCCACGTGGCTACTCTCACACCCAATGGAAAACGTCAGGCGAGAGCTCT 464
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 455 TGGAGGTAGATGCCACGTGGCTACTCTCACACCCAACGGGAAACGTCAGGCGAGAGCTCT 514
Query 465 CGCCGTCTTCTTAAACTCTGAAGGTGTTCGATTCACCTCTGTCTTCTCTTCGCCTCTGGA 524
||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 515 AGCCGTATTTTTAAACTCTGAAGGTGTTCGATTCACCTCCGTCTTCTCTTCGCCTCTGGA 574
Query 525 TCGAGCTAGATCCATGGCTGTTTCCGTTTGCCAGGAAATGAATTTTCCGGAGGAGCATTT 584
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 575 TCGAGCTAGATCCATGGCTGTTTCTGTTTGCCAGGAAATGAATTTTCCTGAGGAGCATTT 634
Query 585 GCAAGTCTCGGATGCTGTCGTTGAGATGAGTTTAGGGGACTGGGAAAGCTGTCATCGGTC 644
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GCAAGTCTCGGATGCTGTGGTTGAGATGAGTTTAGGGGACTGGGAAAGCTGTCATCGGTC 694
Query 645 AGATATCTACACACCGGAAACTCTAAGCTTAATAGAAAGATGCCAACCTGATTTCTCAGC 704
||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 695 AGAGATTTACACACCTGAAACTCTAAGTTTAATAGAAAGATGCCAACCTGATTTCTCAGC 754
Query 705 TCCATCTGGTGAATCACTCAGACAAGTAGAGTTTCGGATGGTTCAGTTTCTGAATGGGAC 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TCCATCTGGTGAATCACTCAGACAAGTAGAGTTTCGGATGGTTCAGTTTCTGAATGGGAC 814
Query 765 AGTCTCAGGACTTTCGGAGAAGCTCAGATCAGAACTTCTTCCATCTACACATCACACAAA 824
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 815 AGTCTCAGGACTTTCGGAGAAGCTCAGGTCAGAACTTCTTCCATCTACACAGCACACAAA 874
Query 825 TTCCCGAGGGTTCTCGTTAGCCACTTCTATTCATCGTCCAATTCTTACAAGGAAGAAATC 884
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 875 TTCCAGAGGGTTCTCGTTAGCTACTTCTATTCATCGCCCAATTCTTACAAGGAAGAAATC 934
Query 885 TGGGAAGAGCCGGTTTCAGGTGATGAATGCAACCGGTGATCACGAGGGTAGTGAAGAGAT 944
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 935 TGGGAAGAGCCGGTTTCAGGTGATGAATGCAACTGGTGATCACGAGGGTAGTGAAGAGAT 994
Query 945 ATTTAGTAATCACAATGATGAACAACACCTAGGTGATATAAACATCAAGAGTTCCTCTTC 1004
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 995 ATTTAGTAATCACAATGATGAACAACACCTAGGTGATATAAACATCAAGAGTTCTTCTTC 1054
Query 1005 TCAACTCTCAACCTGCATTGGAGTTTTCACTCACTCTTTACCTATAAAGTGTCTTCTTAC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TCAACTCTCAACCTGCATTGGAGTTTTCACTCACTCTTTACCTATAAAGTGTCTTCTTAC 1114
Query 1065 CGGTATCCTTGGATGCAGCCCGGTAATGACACAGAAGATCTGTGTGGAGGATTCATCTGT 1124
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1115 CGGTATCCTTGGATGCAGCCCGGTAATGACACATAAGATCTGTGTGGAGGATTCCTCTGT 1174
Query 1125 GACCGTGTTACAGCATTCGTGGACAACCGGTTGGCAG 1161
|||||| |||||||||||||||| |||||| ||||||
Sbjct 1175 GACCGTATTACAGCATTCGTGGAAAACCGGGTGGCAG 1211
> AT1G12845.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast
hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:4378939-4379516 REVERSE
LENGTH=578
Length=578
Score = 638 bits (345), Expect = 0.0
Identities = 376/391 (96%), Gaps = 1/391 (0%)
Strand=Plus/Plus
Query 1302 AACAGAAGAAAAAGAAACACCCATGGCTCTGTTTTCTAGCTTCTCTGTTTCCGCGTTTCT 1361
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 113 AACAGAAGAAAAAGAAACACCCATGGCTCTGTTTTCTAGCGTCTCAGTTTCCGCGTTTCT 172
Query 1362 CTTAATCGTTGTATCGGTTCAATGGACTCTGGTTTACAGTGAATCCACAATCTTAGCTTC 1421
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 173 CTTGATCGTTGTATCGGTTCAATGGACTCTGGTTTGCAGTGAATCCACAATCTTAGCTTC 232
Query 1422 TCCTGCTGTTTTACCGTATATCAATGCACCAGATATGTCTTCATTTTTCCCTTCTCCGAC 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TCCTGCTGTTTTACCGTATATCAATGCACCAGATATGTCTTCATTTTTCCCTTCTCCGAC 292
Query 1482 CAAAGACTGGCCAGTAGAGACAGCGACCTCTCCTGTTCCAGAACCAGAAGCGCCTGGTCC 1541
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 293 CAAAGACTGGCCAATAGAGACAGCGACATCTCCTGTTCCAGAACCAGAAGCGCCTGGTCC 352
Query 1542 AAGCTCAGGCCAGCTTAATGGGAAGATTTCAGGCAGATCAATGCGGCTCCATCCTGATAT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AAGCTCAGGCCAGCTTAATGGGAAGATTTCAGGCAGATCAATGCGGCTCCATCCTGATAT 412
Query 1602 TTCTTTGGTTTTAGCCATTTTTGGGATCTGTAGCTTTCTATGTGTTAATGAATCAATGCT 1661
||| |||||| |||||||| |||||||||||| |||||||||| |||||||| |||| ||
Sbjct 413 TTCCTTGGTTCTAGCCATTGTTGGGATCTGTACCTTTCTATGTTTTAATGAACCAATACT 472
Query 1662 TGTTAGGCTTCTACACTTATTGATGTTGTAA 1692
||||||| ||||||||| |||||||||||||
Sbjct 473 TGTTAGGTTTCTACACT-ATTGATGTTGTAA 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83634107970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5