BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334636
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13330.1 | Symbols: AHP2 | Arabidopsis Hop2 homolog | chr1:4... 1086 0.0
> AT1G13330.1 | Symbols: AHP2 | Arabidopsis Hop2 homolog | chr1:4567935-4570598
FORWARD LENGTH=1020
Length=1020
Score = 1086 bits (588), Expect = 0.0
Identities = 651/682 (95%), Gaps = 2/682 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCTAAATCGGATAACACAGAAGCTATCGTACTCAACTTTGTAAATGAGCAAAAC 60
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 74 ATGGCTCCTAAATCGGATAACACCGAAGCTATCGTACTCAACTTTGTCAATGAGCAAAAC 133
Query 61 AAACCTCTAAACACTCAAAATGCAGCTGATGCTCTGCAAAAGTTTAACCTTAAGAAGACT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 134 AAACCTCTAAACACTCAAAATGCAGCTGATGCTCTACAAAAGTTTAACCTTAAGAAGACT 193
Query 121 GCAGTTCAAAAGGCACTTGATAGCCTTGCTGATGCCGGAAAAATCACGTTCAAAGAGTAT 180
|| || ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 194 GCGGTGCAAAAGGCACTTGATAGTCTTGCTGATGCTGGAAAAATCACGTTTAAAGAGTAT 253
Query 181 GGTAAGCAGAAGATTTACATTGCTAGACAAGACCAGTTTGAGATTCCAAACAGTGAAGAA 240
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 254 GGTAAGCAGAAGATATACATTGCTAGACAAGACCAGTTTGAGATTCCAAACTCTGAAGAA 313
Query 241 CTTGCTCAAATGAAAGAAGAAAACGCCAAACTTCAAGAACAACTCCAAGAGAAGAAGAAA 300
|||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||
Sbjct 314 CTTGCTCAAATGAAAGAAGACAATGCCAAACTTCAAGAACAGCTTCAAGAGAAGAAGAAA 373
Query 301 ACAATCAGTGATGTGGAGTCAGAAATCAAGAGCTTGCAGTCAAACTTGACACTAGAAGAG 360
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 374 ACTATCAGTGATGTGGAATCAGAAATCAAGAGTTTGCAGTCAAACTTGACACTAGAAGAG 433
Query 361 ATACAAGAGAAAGATGCCAAACTAA-GAAAGGAGGTTAGGGAAATGGAAGAGAAACTGAT 419
||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
Sbjct 434 ATACAAGAGAAAGATGCCAAACTAAGGAAA-GAGGTTAAGGAAATGGAAGAGAAACTGGT 492
Query 420 CAAACTACGCGAAGGGATTACATTGGTGAGGCCAGAAGATAAAAAAGCTGTTGAAGATAT 479
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 493 CAAACTACGTGAAGGGATTACATTGGTGAGGCCAGAAGACAAAAAGGCTGTTGAAGATAT 552
Query 480 GTACGCGGATAAGATTAATCAGTGGCGCAAGCGTAAGAGGATGTTCAGAGACATTTGGGA 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GTATGCGGATAAGATTAATCAGTGGCGCAAGCGTAAGAGGATGTTCAGAGACATTTGGGA 612
Query 540 TACTGTAACAGAGAATTCTCCCAAAGATGTTAAGGAACTAAAGGAGGAGCTTGGAATTGA 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 613 TACTGTAACAGAGAATTCTCCCAAAGATGTGAAGGAACTAAAGGAGGAGCTTGGAATTGA 672
Query 600 ATATGATGAAGATGTCGATCTAAGTTTCCAGGCATATTCTGACCTAATTCAACATGGTAA 659
||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 673 ATACGATGAAGATGTCGGTCTAAGTTTCCAGGCATATGCTGACCTAATTCAACATGGTAA 732
Query 660 AAAGAGGCCTAGAGGACAGTAA 681
|||||||||| |||||||||||
Sbjct 733 AAAGAGGCCTCGAGGACAGTAA 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5