BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334678
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13820.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 331 3e-90
> AT1G13820.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:4735547-4737808 FORWARD LENGTH=1286
Length=1286
Score = 331 bits (179), Expect = 3e-90
Identities = 209/223 (94%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 162 GGTTTCACAGAAGACATTGATACTATGGGGAGAGGATGACCAAATCATTAGCAACAAGCT 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GGTTTCACAGAAGACATTGATACTATGGGGAGAGGATGACCAAATCATTAGCAACAAGCT 935
Query 222 CGCTTGGAGACTGCATGGAGAGTTATCGAATGCACGTGTTGAACAAATATCAAACTGTGG 281
||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 936 CGCTTGGAGACTGCACGGAGAATTATCGAATGCACGTGTCAAACAAATATCTAACTGTGG 995
Query 282 ACATCTTCCCCACGTCGAAAAACCGGCTGCTGTTGCTAAACTTATCGCAGAGTTTGTTAG 341
|||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||
Sbjct 996 ACATCTTCCCCATGTCGAAAAGCCGGCTGCTGTCACTAAACTTATAGCAGAGTTTGTTAG 1055
Query 342 AGAGACGTGCAGCAGGTGTAAAGAGGTTGAAAGTATATCTTAG 384
|||||| ||| | |||||||||||||||||||||||||||||
Sbjct 1056 AGAGACTTGC--C-GGTGTAAAGAGGTTGAAAGTATATCTTAG 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18096389640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5