BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334683
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13890.1 | Symbols: SNAP30, ATSNAP30 | soluble N-ethylmaleim... 1282 0.0
> AT1G13890.1 | Symbols: SNAP30, ATSNAP30 | soluble N-ethylmaleimide-sensitive
factor adaptor protein 30 | chr1:4751581-4752844
FORWARD LENGTH=792
Length=792
Score = 1282 bits (694), Expect = 0.0
Identities = 763/796 (96%), Gaps = 5/796 (1%)
Strand=Plus/Plus
Query 1 ATGTTTGGATTTTTCAAATCTCCGGGGAACAATAAGCTTCCCAATGAATCGTCAAACAAC 60
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1 ATGTTTGGGTTTTTCAAATCTCCGGGGAACAATAAACTTCCCAATGAATCATCAAACAAC 60
Query 61 AAAGGAGGAACAATCACTGCAGGAAGAAGGACTTCTTCAGAACCAATCCTGATAACACCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGGAGGAACAATCACTGCAGGAAGAAGGACTTCTTCAGAACCAATCCTGATAACACCA 120
Query 121 GATTTCGACGATGACGACAAATACAAGAACGGTTTCAGCGATTCCGGTGGTTTGCAGAGC 180
||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct 121 GATTTCGACGATGACGACAAATACAAGAACGGTTTCAACGATTCTGGTGGTCTGCAGAGC 180
Query 181 CAAACAACAGAAGAATTAGAAAACTACGCGGTTTATAAAGCTGAAGAAACAACCAAAGGT 240
||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 181 CAAACGACAGAAGAATTAGAAAAATATGCAGTTTATAAAGCTGAAGAAACAACCAAAGGT 240
Query 241 GTTAATAATTGTCTTAAGATCGCTGAAGATATAAGATCAGATGCTACAAGAACGCTCGAA 300
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 241 GTTAATAATTGTCTTAAGATCGCTGAAGATATAAGATCAGATGGTGCAAGAACGCTCGAA 300
Query 301 ATGTTGCATCAGCAAGGTGAACAGATCAACAGGACTCATGTTATGGCTGTTGATATGGAT 360
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 301 ATGTTGCATCAGCAAGGTGAACAAATCAACAGGACTCATGAAATGGCTGTTGATATGGAT 360
Query 361 AAAGATCTCAGTCGGGGGGAGAAGCTTTTGAACAACTTAGGAGGAATGTTTTCAAAGCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGATCTCAGTCGGGGGGAGAAGCTTTTGAACAACTTAGGAGGAATGTTTTCAAAGCCA 420
Query 421 TGGAAACCTAAGAAGACTAAAAATATCACAGGACCTATGATCACACCAGATAAACCGTCG 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGAAACCAAAGAAGACTAAAAATATCACAGGACCTATGATCACACCAGATAAACCGTCG 480
Query 481 AAGAAGAGCGAGAATCACAAAGAAGAACGAGAGAAACTCGGTTTGGGTGCGAAAGGTCGA 540
|||||||||||||||||||| ||||| || |||||||| ||||||||||| ||||| |||
Sbjct 481 AAGAAGAGCGAGAATCACAAGGAAGAGCGGGAGAAACTTGGTTTGGGTGCAAAAGGACGA 540
Query 541 TCGAGCAGTCAACCATCAGGATTAGGA-CAACCAACAAACGCGTTGCAGAAAGTTGAGCA 599
|||||||||||| | ||| |||| || ||||||||||| ||||||||||||||||||||
Sbjct 541 TCGAGCAGTCAA-C--CAGCATTA-GATCAACCAACAAATGCGTTGCAGAAAGTTGAGCA 596
Query 600 AGAGAAGGCAAAGCAAGACGATGGACTTTCAGATTTAAGTGACATATTGGGTGATCTTAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGAGAAGGCAAAGCAAGACGATGGACTTTCAGATTTAAGTGACATATTGGGTGATCTTAA 656
Query 660 GAGCATGGCCGTTGATATGGGATCTGAGATCGACAAGCAAAACAAAGCCCTTGATCATCT 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 657 GAGCATGGCCGTTGATATGGGATCTGAGATCGACAAGCAAAACAAAGCTCTTGATCATCT 716
Query 720 CGGAGACGATGTTGATGAGCTTAACTCTCGTGTTCAAGGAGCTAATCAACGCGCACGTCA 779
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 717 CGGCGACGATGTTGATGAGCTTAACTCTCGTGTTCAAGGAGCTAATCAACGGGCACGTCA 776
Query 780 CTTGCTTTCTAAATAA 795
||||||||| ||||||
Sbjct 777 CTTGCTTTCCAAATAA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5