BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334708
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14140.1 | Symbols: | Mitochondrial substrate carrier famil... 1461 0.0
> AT1G14140.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr1:4837927-4839633 REVERSE LENGTH=1153
Length=1153
Score = 1461 bits (791), Expect = 0.0
Identities = 877/919 (95%), Gaps = 4/919 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCGGAGCCGAGTGGCCGGAGAAGCACCGACCGGAACCAGGATCCTGCTTGCGTCA 60
|||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 32 ATGGAGCGGAGCCGAGTGACCAGAGAAGCACCGACCGGAACCAGGATCCTGCTTGCTTCA 91
Query 61 CTATCTGCGATGGTCGCAGAGTCAGTTACGTTTCCGATTGATCTCACTAAA-ACTAGAAT 119
|| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 92 CTCTCTGCGATGGTTGCAGAGTCAGTTACGTTTCCGATTGATCTCAC-AAAGACTAGAAT 150
Query 120 GCAGCTCCATGGTTCGGGATCTGCTTCTGGTACGCACCGGATTGGCGCTATCGGAGTCGT 179
||||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||
Sbjct 151 GCAGCTCCATGGTTCGGGATCCGCTTCTGGTGCGCATCGGATTGGCGCTTTCGGAGTCGT 210
Query 180 ATCGGAGATTGCGAGGAAGGAAGGAGTTATTGGTCTCTATAAAGGTCTATCTCCGGCGAT 239
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 211 ATCGGAGATTGCGAGAAAGGAAGGAGTGATTGGTCTCTACAAAGGTCTATCTCCGGCGAT 270
Query 240 TATCAGACACATGTTCTACACGCCAATAAGGATCATTGGATACGAGAATTTGAAAGGATT 299
|||||||||| ||||||||||||| || || ||||||||||||||||||||||||||| |
Sbjct 271 TATCAGACACCTGTTCTACACGCCTATCAGAATCATTGGATACGAGAATTTGAAAGGACT 330
Query 300 CATCGTCAGATCTGAAACTAACAACGGCGAGTCTCTTTCTCTGGCCACAAAGGCTCTCGT 359
|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct 331 CATCGTCAGATCTGAAACTAACAATAGCGAGTCTCTTCCTCTCGCCACAAAGGCTCTCGT 390
Query 360 CGGAGGATTTTCTGGTGTTATAGCTCAGGTAGTGGCTAGTCCAGCTGATTTGGTCAAAGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 CGGAGGATTTTCTGGTGTTATAGCTCAGGTAGTGGCTAGTCCAGCTGATTTGGTCAAAGT 450
Query 420 GAGAATGCAAGCAGATGGTAGATTGGTGAGCCAAGGCCTGAAACCGAGATACTCGGGACC 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 451 GAGAATGCAAGCAGATGGTAGATTGGTGAGCCAAGGCCTGAAACCGAGGTACTCGGGACC 510
Query 480 AATCGAAGCTTTCACCAAAATCCTACAATCAGAAGGAGTAAAA-GGTCTATGGAAAGGTG 538
|||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 511 AATCGAGGCTTTTACCAAAATCCTACAATCAGAAGGAGTAAAAGGGT-TATGGAAAGGTG 569
Query 539 TTCTTCCAAACATCCAGAGAGCATTTCTAGTGAATATGGGAGAACTAGCTTGCTATGATC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TTCTTCCAAACATCCAGAGAGCATTTCTAGTGAATATGGGAGAACTAGCTTGCTATGATC 629
Query 599 ACGCCAAACACTTTGTCATCGATAAGAAGATTGCTGAGGATAACATTATTGCGCACACGC 658
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 630 ACGCCAAACACTTTGTCATCGATAAGAAGATTGCTGAGGATAACATTTTTGCGCACACTC 689
Query 659 TTGCTTCTATAATGTCGGGTCTTGCTTCTACAACTTTGAGTTGTCCAGCTGATGTGGTGA 718
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 690 TTGCTTCTATAATGTCGGGTCTTGCTTCGACAAGTTTGAGTTGTCCAGCTGATGTGGTGA 749
Query 719 AGACGAGGATGATGAACCAGGGTGAAAATGCTGTGTACAGAAACTCCTACGACTGTTTGG 778
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 750 AGACGAGGATGATGAACCAGGGTGAAAATGCTGTGTACAGAAATTCTTACGACTGTTTGG 809
Query 779 TGAAGACGGTTAGGTTTGAAGGAATAAGAGCTTTGTGGAAAGGTTTCTTCCCGACATGGG 838
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TGAAGACGGTTAAGTTTGAAGGAATAAGAGCTTTGTGGAAAGGTTTCTTCCCGACATGGG 869
Query 839 CAAGGCTTGGACCGTGGCAGTTCGTGTTTTGGGTCTCTTACGAGAAGTTTAGACAACTCG 898
||||||||||||||||||||||||||||||||||||| || ||||||||||||| || |
Sbjct 870 CAAGGCTTGGACCGTGGCAGTTCGTGTTTTGGGTCTCCTATGAGAAGTTTAGACTGCTGG 929
Query 899 CAGGGATCTCGTCCTTCTA 917
|||| ||||| ||||||||
Sbjct 930 CAGGAATCTCTTCCTTCTA 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5