BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334713
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14190.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 2207 0.0
AT1G14185.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 2163 0.0
> AT1G14190.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase
family protein | chr1:4852802-4854307 FORWARD LENGTH=1506
Length=1506
Score = 2207 bits (1195), Expect = 0.0
Identities = 1407/1510 (93%), Gaps = 11/1510 (1%)
Strand=Plus/Plus
Query 64 ATGCCTTACATGACCACAGATCCGAAAGAAGTTTCCGGCAAGTCATTCGATTACATCGTT 123
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTTACATGACCACAGATGCTAAAGAAGTTTCCGGCAAGTCATTCGATTACATCGTT 60
Query 124 GTTGGAGGCGGAACTGCGGGATGCTCCTTAGCCGCAACTCTGTCTGAGAAATACTCTGTT 183
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GTAGGTGGCGGAACTGCGGGATGCTCCTTAGCCGCAACTCTATCTGAGAAATACTCTGTT 120
Query 184 CTGGTCATTGAACGCGGTGGCTCCCCTTTTGGAGATCCATTAGTAGAAGAAAGAAGGTAC 243
|| ||||||||||| |||||||| |||||||| ||||| |||||||| ||||||| ||||
Sbjct 121 CTTGTCATTGAACGTGGTGGCTCACCTTTTGGTGATCCTTTAGTAGAGGAAAGAAAGTAC 180
Query 244 TTTGGATACTCATTGCTAAATACAGATGAATACTCATCTGTTGCTCAAAGTTTTACCTCT 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TTTGGATACTCATTGCTAAATACAGATGAATACTCATCTGTTGCGCAAAGTTTTACCTCT 240
Query 304 GTAGATGGAATCGAAAACTACAGAGGACGTGTGCTTGGAGGATCGAGTGCTATAAATGGC 363
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 241 GTAGATGGAATCGAAAACTACAGAGGACGCGTTCTTGGAGGATCGAGCGCTATAAATGGC 300
Query 364 GGATTTTACAGCCGAGCTAGCGATGAGTTTGTGAAGAAAACTGGTTGGGACAAGGATCTG 423
||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 301 GGATTTTACAGCCGAGCAAGCGATGAGTTTGTGAAGAAAGCTGGATGGGACAAGGGTCTG 360
Query 424 GTTCAAGATTCTTATAAATGGGTTGAGTCTAAGGTTGTCTTCATGCCAGAATTGACTCAA 483
|||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 361 GTTCAAGAATCTTATAAATGGGTTGAGTCTAAGGTTGTTTTCATGCCAGAACTGACTCAA 420
Query 484 TGGCAATCTGTTGTTCAATTCGGGTTTCTTGAAGCCGGGTTTTATCCGTATAACGGATAT 543
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 TGGCAATCTGTTGTGCAATTCGGGTTTCTTGAAGCCGGGTTTTATCCATATAACGGATAT 480
Query 544 AGTTTGGAGCACACGCAAGGGACAAAGATCGGTGGAAGCATATATGATCAGTGTGGGAAA 603
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 481 AGTTTGGAGCACACGCAAGGGACAAAAATCGGTGGAAGCATATACGATCAGTGTGGGAAA 540
Query 604 AGACATACATCTGCAGATCTTTTGGGATTTGGTAAACCAAATTACATCACTGTTCTTCTA 663
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||
Sbjct 541 AGACATACATCTGCAGATCTTTTGGGATTTGGTAAACCAAATTGTATAACTGTTCTTTTA 600
Query 664 AACGCAACGGTCCAA-AGCATAATCTTTGAT-GC--TAACAAAACTCGCGCAGTTGGAGT 719
||| ||||||| || ||||||||||||||| | ||| || ||||| || ||||||||
Sbjct 601 AACACAACGGTA-AAGAGCATAATCTTTGATAGTAGTAATAAGACTCGTGCGGTTGGAGT 659
Query 720 TAGGTTTTTGGAGAGTGATGGGAACTCAAATAAGAGCTACAAAGCTCATGTTGAGAAGCA 779
||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 660 TAGGTTTATGGAGAGTGATGGGAACTCAAGTAAGAGCTACAAAGTTCATGTTGAGCAGCA 719
Query 780 TAGAGGCGAGGTTATACTCACGGCTGGGGCTTTAGGTAGTCCGCAGATCCTCCTCTTAAG 839
||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 720 TAGAGGCGAGGTTATACTCGCGGCTGGGGCTTTAGGTAGTCCGCAGATTCTTCTCTTAAG 779
Query 840 CGGAATTGGACCCGAGAATCATCTAAAAGATTTCGACATTCCTGTGATTGTCAATCTCAA 899
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 CGGTATTGGACCCGAGAATCATCTAAAGGATTTCGACATTCCTGTGATTGTCAATCTCAA 839
Query 900 AGAAGTCGGAAGAAAAATGTCAGATAATCCAGCAATTTCTCTTCTTGTTGATAGAATCTC 959
||||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||
Sbjct 840 AGAAGTCGGAAGAAAAATGTCGGATAATCCAGCGATCTCTCTTCTTGTTGATAGATTCTC 899
Query 960 GCAAAACCGCACACTCGAGCCACCTCAAGTTGCAGCGATTGCAGAAGGTTTCAAATTCAT 1019
|||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 900 GCAAAACCGCACACTCGAGCCACCTCAAGTTGCAGCAATAGCAGAAGGTTACAAATTCAT 959
Query 1020 AGTCGAATCTGAGGTTCTTCCAACTGACATCACCACAACAAGAATCTCTATAGCAGCTAA 1079
| ||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 960 ACTCGAATCCGAGGTTCTCCCAACTGACATTACCACAACAAGAATCTCTATAGCAGCCAA 1019
Query 1080 GATTGCATTCCCTAAATCCAAAGGAAGGCTCAAGCTTAACAGCACTAACCCTATGGAGAA 1139
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 AATCGCATTCCCTAAATCCAAAGGAAGGCTCAAGCTTAACAGCACTAACCCTAGGGAGAA 1079
Query 1140 TCCGGCAGTGAAATTCAACTACTTG-AAGAACAAGGAAGACCTTGACGCATGCCAAGAGA 1198
|||| |||||||||||||||||||| || ||||||| |||||| |||||||||| |||||
Sbjct 1080 TCCGTCAGTGAAATTCAACTACTTGGAA-AACAAGGCAGACCTCGACGCATGCCTAGAGA 1138
Query 1199 TGGTTCTGCATCTTCAACACGTAGCGAGGTCAGAGTGTGTGACGTTTTTCTTGGGTACAC 1258
||||||||||||||||||| ||||||||||| ||| ||| ||||| |||||||| ||||
Sbjct 1139 TGGTTCTGCATCTTCAACATGTAGCGAGGTCTGAGACTGTCACGTTCTTCTTGGGGACAC 1198
Query 1259 AAGCTCAGGATAAGCTTGTGGCAGGTGACGAAGACCTTAAGAA-CTTCTGTA-AACAGAA 1316
||||||| |||||||||||||| ||||||||||| ||||| || |||||| | || ||||
Sbjct 1199 AAGCTCATGATAAGCTTGTGGCGGGTGACGAAGAGCTTAA-AAGCTTCTGCATAA-AGAA 1256
Query 1317 TGTTAGAACTTATTATCATTACCACGGCGGTTGCATTGTGGGATCTGTCGTGGACGAGGA 1376
|||||||||||||||||||||||| || |||||| |||| |||||||| |||||||||||
Sbjct 1257 TGTTAGAACTTATTATCATTACCATGGTGGTTGCGTTGTTGGATCTGTTGTGGACGAGGA 1316
Query 1377 CTATAAAGTGAATGGTGTGAAGCGTTTAAGAGTCATTGATGGTTCAACGTTTGAAGAATC 1436
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1317 GTATAAAGTGAATGGTGTTAAGCGTTTAAGAGTTGTTGATGGTTCAACGTTTGAAGAATC 1376
Query 1437 ACCAGGAACAAACCCTATGGCTACTGTTTTAATGTTGGGAAGATATCAAGGAATCAAAAT 1496
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1377 ACCAGGAACAAACCCTATGGCTACTGTTTTAATGCTGGGAAGATATCAAGGAATCAAAAT 1436
Query 1497 ACTCAAAGAACGAGAAGAACAAGAAAATATGTTTCTTAGCCCTCAAGGAAGCCCACAACC 1556
|||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||
Sbjct 1437 ACTCAAAGAACGAGAAGAGCAAGAAGATACATTTCTTAGCCCTCAAGGTAGCCCACAACC 1496
Query 1557 ACAGCCATAA 1566
||||||||||
Sbjct 1497 ACAGCCATAA 1506
> AT1G14185.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase
family protein | chr1:4850274-4852096 FORWARD LENGTH=1733
Length=1733
Score = 2163 bits (1171), Expect = 0.0
Identities = 1400/1512 (93%), Gaps = 10/1512 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCATTTTGTGTTTCTCTTTATCATTTTCATGTTCATTAATCTGTCAGAAGGAGCG 60
|||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||
Sbjct 11 ATGTCTCATTTTGTGTTTCTCTTTATTATTTCCATGTTCATTAATCTGTCACAAGGAGCG 70
Query 61 CAAATGCCTTACATGACCACAGATCCGAAAGAAGTTTCCGGCAAGTCATTCGATTACATC 120
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 71 CAAATGCCTTACATGACTACTGATCCGAAAGAAGTTTCCGGCAAGTCATTCGATTACATC 130
Query 121 GTTGTTGGAGGCGGAACTGCGGGATGCTCCTTAGCCGCAACTCTGTCTGAGAAATACTCT 180
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 131 GTTGTTGGAGGCGGAACTGCGGGGTGTTCCTTAGCTGCTACTCTGTCTGAGAAATACTCT 190
Query 181 GTTCTGGTCATTGAACGCGGTGGCTCCCCTTTTGGAGATCCATTAGTAGAAGA-AAGAAG 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 191 GTTCTGGTCATTGAACGCGGTGGCTCGCCTTTTGGAGATCCATTAGTAGAAGATAA-AAA 249
Query 240 GTACTTTGGATACTCATTGCTAAATACAGATGAATACTCATCTGTTGCTCAAAGTTTTAC 299
||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct 250 GTACTATGGATACTCATTGATAAATACAGATGAATACTCATCCGTTGCGCAAAGTTTTAC 309
Query 300 CTCTGTAGATGGAATCGAAAACTACAGAGGACGTGTGCTTGGAGGATCGAGTGCTATAAA 359
||| |||||||||||| ||||| ||||||||||||| |||||||||||||| ||||| ||
Sbjct 310 CTCCGTAGATGGAATCAAAAACCACAGAGGACGTGTTCTTGGAGGATCGAGCGCTATCAA 369
Query 360 TGGCGGATTTTACAGCCGAGCTAGCGATGAGTTTGTGAAGAAAACTGGTTGGGACAAGGA 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 370 TGGCGGATTTTACAGCCGAGCTAGCGATGAGTTTGTGAAGAAAGCTGGTTGGGACAAGGA 429
Query 420 TCTGGTTCAAGATTCTTATAAATGGGTTGAGTCTAAGGTTGTCTTCATGCCAGAATTGAC 479
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 430 TCTGGTTCAAGAATCTTATAAATGGGTTGAGTCTAAGGTTGTCTTCATGCCGGAGTTGAC 489
Query 480 TCAATGGCAATCTGTTGTTCAATTCGGGTTTCTTGAAGCCGGGTTTTATCCGTATAACGG 539
|| ||||||||| |||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct 490 TCGATGGCAATCCATTGTGCAGTTCGGATTTCTTGAAGCAGGGTTTTATCCGTATAACGG 549
Query 540 ATATAGTTTGGAGCACACGCAAGGGACAAAGATCGGTGGAAGCATATATGATCAGTGTGG 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 550 ATATAGTTTGGAGCACACGCAAGGGACAAAGATCGGTGGAAGCATATTTGATCAGTGTGG 609
Query 600 GAAAAGACATACATCTGCAGATCTTTTGGGATTTGGTAAACCAAATTACATCACTGTTCT 659
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 610 GAAAAGACATACATCTGCAGATCTTTTGGGATATGGTAAACCAAATTGCATCACTGTTCT 669
Query 660 TCTAAACGCAACGGTCCAA-AGCATAATCTTTGATGCTAACAAAACTCGCGCAGTTGGAG 718
||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 670 TCTAAACGCAACGGTA-AAGAGCATAATCTTTGATGCTAACAAGACTCGCGCAGTTGGAG 728
Query 719 TTAGGTTTTTGGAGAGTGATGGGAACTCAAATAAGAGCTACAAAGCTCATGTTGAGAAGC 778
|||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 729 TTAGGTTTATGGAGAGTGATGGGAACTCAAGTAAGAGCTACAAAGTTCATGTTGAGCAGC 788
Query 779 ATAGAGGCGAGGTTATACTCACGGCTGGGGCTTTAGGTAGTCCGCAGATCCTCCTCTTAA 838
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 789 ATAGAGGCGAGGTTATACTTGCGGCTGGGGCTTTAGGTAGTCCGCAGATTCTCCTCTTAA 848
Query 839 GCGGAATTGGACCCGAGAATCATCTAAAAGATTTCGACATTCCTGTGATTGTCAATCTCA 898
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 849 GCGGTATTGGACCCGAGAATCATCTCAATGATTTCGACATTCCTGTGATTGTCAATCTCA 908
Query 899 AAGAAGTCGGAAGAA-AAATGTCAGATAATCCAGCAATTTCTCTTCTTGTTGATAGAATC 957
|||||||||||| || ||||||||||||||||||| || |||||||| ||||||||| ||
Sbjct 909 AAGAAGTCGGAA-AACAAATGTCAGATAATCCAGCGATCTCTCTTCTCGTTGATAGATTC 967
Query 958 TCGCAAAACCGCACACTCGAGCCACCTCAAGTTGCAGCGATTGCAGAAGGTTTCAAATTC 1017
|||||||||| |||| |||| ||||||||||||| |||||| |||||||||| ||||||
Sbjct 968 TCGCAAAACCTCACAGTCGATCCACCTCAAGTTGTAGCGATAACAGAAGGTTTTAAATTC 1027
Query 1018 ATAGTCGAATCTGAGGTTCTTCCAACTGACATCACCACAACAAGAATCTCTATAGCAGCT 1077
||| || |||| ||||||||||||| |||| ||||||||||||| | ||||| ||||
Sbjct 1028 ATACTCCAATCCCTGGTTCTTCCAACTAACATTACCACAACAAGAACCGCTATATCAGCC 1087
Query 1078 AAGATTGCATTCCCTAAATCCAAAGGAAGGCTCAAGCTTAACAGCACTAACCCTATGGAG 1137
|| || ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 1088 AAAATCGCATTCCCTAAATCCAAAGGAAGACTCAAGCTTAACAACACTAACCCTAGGGAG 1147
Query 1138 AATCCGGCAGTGAAATTCAACTACTTG-AAGAACAAGGAAGACCTTGACGCATGCCAAGA 1196
|||||| |||||| |||||||||||| || ||||||| |||||||||||||||||||||
Sbjct 1148 AATCCGTCAGTGACGTTCAACTACTTGGAA-AACAAGGCAGACCTTGACGCATGCCAAGA 1206
Query 1197 GATGGTTCTGCATCTTCAACACGTAGCGAGGTCAGAGTGTGTGACGTTTTTCTTGGGTAC 1256
||||||| |||||||||||||||| || |||||| || |||||||||||||||||| ||
Sbjct 1207 GATGGTTTTGCATCTTCAACACGTGGCTAGGTCAAAGACTGTGACGTTTTTCTTGGGGAC 1266
Query 1257 ACAAGCTCAGGATAAGCTTGTGGCAGGTGACGAAGACCTTAAGAACTTCTGTA-AACAGA 1315
|||||||||||||||||| ||||||||||||||||| |||||||| ||||| | || |||
Sbjct 1267 ACAAGCTCAGGATAAGCTAGTGGCAGGTGACGAAGAGCTTAAGAAGTTCTGCATAA-AGA 1325
Query 1316 ATGTTAGAACTTATTATCATTACCACGGCGGTTGCATTGTGGGATCTGTCGTGGACGAGG 1375
|||| |||||||||||||||||||| || |||||| ||||||||||||||||| | ||||
Sbjct 1326 ATGTGAGAACTTATTATCATTACCATGGGGGTTGCGTTGTGGGATCTGTCGTGAATGAGG 1385
Query 1376 ACTATAAAGTGAATGGTGTGAAGCGTTTAAGAGTCATTGATGGTTCAACGTTTGAAGAAT 1435
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1386 AATATAAAGTGAATGGTGTGAAGCGTTTAAGAGTCGTTGATGGTTCAACGTTTGAAGAAT 1445
Query 1436 CACCAGGAACAAACCCTATGGCTACTGTTTTAATGTTGGGAAGATATCAAGGAATCAAAA 1495
|||||||||||||||||||||| || || |||||| |||||||||||||||||||||| |
Sbjct 1446 CACCAGGAACAAACCCTATGGCAACAGTATTAATGCTGGGAAGATATCAAGGAATCAAGA 1505
Query 1496 TACTCAAAGAAC 1507
||||||||||||
Sbjct 1506 TACTCAAAGAAC 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5