BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334745
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14518.1 | Symbols: | other RNA | chr1:4966810-4967493 REVE... 327 8e-89
> AT1G14518.1 | Symbols: | other RNA | chr1:4966810-4967493 REVERSE
LENGTH=605
Length=605
Score = 327 bits (177), Expect = 8e-89
Identities = 205/218 (94%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 132 AGATGATTTGCTTGCAAAAAACACCACGAATCTCCTTGTTCTGGTATCCGGAAGAGTTGG 191
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 30 AGATGATTTGCTTGCAAAAAACACCACGAATCTCCTTGTTTTGGTATCCGGAAGAGTTGG 89
Query 192 TTCCGCAGCTCCCCTCGACTGCAAACACAATGGTCTTTTGGGTG-TTCTTGTTGAGGAAA 250
||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 90 TTCCGCAGCTCCCCTCGACTGCAAACACAATGGTCTTTTTGGTGCTT-TTGTTGAGGAAA 148
Query 251 CGGCTAAACTGGATTGTGA-GATCAAGTTGGAAGGTGGTGGTTTGATAGACAAGTCTCTA 309
|||||||||||||||| | |||| ||||||| |||||| |||||||||| |||||||||
Sbjct 149 AGGCTAAACTGGATTGT-ATGATCGAGTTGGACGGTGGTAGTTTGATAGAGAAGTCTCTA 207
Query 310 AAGTTTCTGTTACATCAAAAGGAGACTCCTTGGTATCT 347
| | ||||||||||||||||||||||||||||||||||
Sbjct 208 ACGATTCTGTTACATCAAAAGGAGACTCCTTGGTATCT 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5