BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334813
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15215.2 | Symbols: | BEST Arabidopsis thaliana protein mat... 813 0.0
> AT1G15215.2 | Symbols: | BEST Arabidopsis thaliana protein match
is: sequence-specific DNA binding transcription factors;sequence-specific
DNA binding (TAIR:AT3G18380.1); Has 89 Blast
hits to 86 proteins in 16 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:5238065-5240051
FORWARD LENGTH=1089
Length=1089
Score = 813 bits (440), Expect = 0.0
Identities = 577/638 (90%), Gaps = 29/638 (5%)
Strand=Plus/Plus
Query 220 AGTTGTTCTGTGAATCGGAATGGAAAATCCACGGTAACCTGGAAACAGATACAGAGTTGG 279
||||||||||||||||||||||| |||||| | |||||||||||||| |||||| ||||
Sbjct 170 AGTTGTTCTGTGAATCGGAATGGCAAATCCTCTATAACCTGGAAACAGGTACAGATTTGG 229
Query 280 TTCCAGGAGAAGCTGAAGCAGC-AATCTCAACCCAAATTCAAAACTTTGCCATCTCCCCC 338
|||||||||||||||||||| | || | ||||| |||| |||||||||||||||||||||
Sbjct 230 TTCCAGGAGAAGCTGAAGCATCAAAGC-CAACCAAAATCCAAAACTTTGCCATCTCCCCC 288
Query 339 TTT---G---CA-GA--T-TC--AT----G-ACTTAT-C-T--AAT-CC-CAGTTG-T-- 372
||| | || || | || || | ||||| | | ||| || || || |
Sbjct 289 TTTGCAGATTCATGACTTATCTAATCCCAGTTCTTATGCTTCAAATGCCTCAAATGCTAC 348
Query 373 -TATGCTGCAAATGCTACCTTTGTTCAAACACGAAAAGGTAAAGCCTCTGATTTAGCTGA 431
| || || ||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 349 CTTTGTTGGGAATTCTACCTTTGTTCAAACACGAAAAGGCAAGGCCTCTGATTTAGCTGA 408
Query 432 TCTGGCTTTTGAGGCTAAATCAGCACGGGACTACGCGTGGTATGACGTGTCTTCGTTCCT 491
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 409 TCTGGCTTTTGAGGCTAAATCAGCGCGGGACTACGCGTGGTATGACGTGTCTTCGTTCCT 468
Query 492 TACTTATAGAGTTCTTCGCACTGGTGAACTGGAAGTGCGTGTACGCTTTTCTGGGTTCGA 551
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 469 TACTTATAGAGTTCTTCGCACTGGTGAACTGGAAGTGCGTGTACGGTTTTCTGGGTTCGA 528
Query 552 CAACCGACACGATGAGTGGGTAAACGTCAAAACATCAGTGCGTGAGCGGTCTATTCCTGT 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CAACCGACACGATGAGTGGGTAAACGTCAAAACATCAGTGCGTGAGCGGTCTATTCCTGT 588
Query 612 AGAACCATCAGAGTGTGGGAGAGTGAATGTTGGAGACCTGCTTCTATGTTTCCAAGAAAG 671
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 589 AGAACCATCAGAGTGTGGGAGAGTGAACGTTGGAGACCTGCTTCTATGTTTCCAAGAAAG 648
Query 672 GGAGGATCAAGCACTGTACTGTGATGGTCATGTTGTGAATATCAAGAGAGGGATTCATGA 731
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 649 AGAGGATCAAGCACTCTACTGTGATGGTCATGTTTTGAATATCAAGAGAGGGATTCATGA 708
Query 732 TCACGGGAGATGTAACTGCGTGTTTCTTGTTCGCTACGACCTTGACAATACAGAGGAACC 791
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 709 TCACGCGAGATGTAACTGCGTGTTTCTTGTTCGCTACGAGCTTGACAATACAGAGGAATC 768
Query 792 TCTGGGATTAGAAAGAATTTGCCGCCGCCCTGATGAGT 829
|||||| ||||||||||||||||||||||||| ||||
Sbjct 769 GCTGGGACTAGAAAGAATTTGCCGCCGCCCTGAAGAGT 806
Score = 152 bits (82), Expect = 5e-36
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 104 AGATTGTAGACATGGAGAATCTGTATAAGGAGCTCGGTGATCAATCTCTCCACAAAGATT 163
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 84 AGATTGTAGACATGGAGAATCTGTATAAGGAGCTCGGTGACCAATCTCTCCACAAAGATT 143
Query 164 TCTGTCAAACTGTTGCCTCCACTTTTAG 191
||||||||||||||||||| ||||||||
Sbjct 144 TCTGTCAAACTGTTGCCTCTACTTTTAG 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5