BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334826
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15390.1 | Symbols: PDF1A, ATDEF1 | peptide deformylase 1A |... 1360 0.0
> AT1G15390.1 | Symbols: PDF1A, ATDEF1 | peptide deformylase 1A
| chr1:5294629-5295797 FORWARD LENGTH=1006
Length=1006
Score = 1360 bits (736), Expect = 0.0
Identities = 788/813 (97%), Gaps = 3/813 (0%)
Strand=Plus/Plus
Query 1 ATGGGACTCCACAGAGACCAAGCGACGGCCATGGGAACCCTTTTCAGAGTCTCACTTCGT 60
|||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 25 ATGGGACTCCACCGAGACGAAGCGACGGCCATGGAAACCCTTTTCAGAGTCTCACTTCGT 84
Query 61 CTACTTCCGGTTTCCGCCGCCGTGACATGTCGCTCGATCCGATTCCCCGTTTCGAGACCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 85 CTACTTCCGGTTTCCGCCGCCGTGACATGTCGCTCGATCCGATTCCCCGTTTCAAGACCC 144
Query 121 GGTTCCTCACACTTGTTGAACCGTAAACTGTATAATTTGCCTTCTTCTTCTTCCTCATCC 180
|||||||||||||| |||||||||| ||||||||||||||| ||||||||| | | |||
Sbjct 145 GGTTCCTCACACTTACTGAACCGTAAGCTGTATAATTTGCCTACTTCTTCTT-C-C-TCC 201
Query 181 TCTTTGTCGACAAAAGCCGGTTGGTTATTGGGTCTGGGGGAGAAGAAAAAGAAAGTGGAT 240
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 202 TCTTTGTCGACAAAAGCCGGTTGGTTATTGGGTCTTGGTGAGAAGAAAAAGAAAGTGGAT 261
Query 241 TTACCGGAGATAGTGGCAGCTGGTGACCCGGTTCTGCACGAGAAGGCCCGAGAGGTTGAC 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 262 TTACCGGAGATAGTGGCATCTGGTGACCCGGTTCTGCACGAGAAGGCCCGAGAAGTTGAC 321
Query 301 CCGGGAGAAATCGGGTCGGAGCGTATTCAGAAGATAATTGATGATATGATTAAAGTGATG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 322 CCGGGAGAAATCGGGTCGGAGCGTATTCAGAAGATAATTGATGATATGATTAAAGTTATG 381
Query 361 AGATTGGCTCCTGGAGTTGGCCTCGCTGCTCCTCAAATTGGTGTTCCCTTAAGGATTATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 AGATTGGCTCCTGGAGTTGGCCTCGCTGCTCCTCAAATTGGTGTTCCCTTAAGGATTATT 441
Query 421 GTATTGGAAGATACAAAAGAGTATATAAGTTACGCACCAAAGGAAGAGATTCTTGCTCAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GTATTGGAAGATACAAAAGAGTATATAAGTTACGCACCAAAGGAAGAGATTCTTGCTCAA 501
Query 481 GAAAGACGTCATTTTGATCTCATGGTGATGGTGAATCCGGTTCTCAAGGAGAGAAGCAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GAAAGACGTCATTTTGATCTCATGGTGATGGTGAATCCGGTTCTCAAGGAGAGAAGCAAC 561
Query 541 AAGAAAGCTCTCTTCTTTGAAGGATGTTTGAGTGTTGATGGATTCAGAGCTGCGGTGGAG 600
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 562 AAGAAAGCTCTTTTCTTTGAAGGATGCTTGAGTGTTGATGGATTCAGAGCTGCGGTGGAG 621
Query 601 AGATACCTTGAGGTGGTAGTAACAGGCTACGATCGTCAAGGAAAGAGGATTGAAGTGAAT 660
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 622 AGATACCTTGAGGTGGTAGTGACGGGCTACGATCGTCAAGGAAAGAGGATTGAAGTGAAT 681
Query 661 GCTTCAGGTTGGCAAGCGAGGATTTTGCAACATGAGTGTGATCATTTGGATGGCAATCTT 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 682 GCTTCAGGTTGGCAAGCTAGGATTTTGCAACATGAGTGTGATCATTTGGATGGTAATCTT 741
Query 721 TATGTTGATAAGATGGTACCACGCACTTTTAGGACAGTCGACAACTTGGACTTGCCTCTA 780
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 742 TACGTTGATAAGATGGTACCACGCACTTTTAGGACAGTCGACAACTTGGACTTGCCTTTA 801
Query 781 GCTGAGGGCTGTCCTAAGCTCGGACCTCAATGA 813
||||||||||| |||||||||||||||||||||
Sbjct 802 GCTGAGGGCTGCCCTAAGCTCGGACCTCAATGA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5