BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334843
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15590.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 710 0.0
> AT1G15590.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RING/U-box superfamily protein (TAIR:AT1G80400.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:5367374-5368670 FORWARD LENGTH=880
Length=880
Score = 710 bits (384), Expect = 0.0
Identities = 477/522 (91%), Gaps = 6/522 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGCGAATCCGACAATGATAATGATGAGCACATTATCGAAATTACAAACGACGAC 60
||||| ||||||||| ||| |||||||||||| ||||| ||||| ||||||||||| ||
Sbjct 1 ATGGACAGCGAATCCCACAGTGATAATGATGATCACATAATCGACATTACAAACGATGAA 60
Query 61 GGTTCTTTATCGGGATCGTCTTTGGACGAGAGAAGCTACT-CTTCATTAAGCTCGTCTGT 119
| ||||| ||| ||||||||||||||||||||||||| | |||||||||| |||||| |
Sbjct 61 GATTCTTCATCAAGATCGTCTTTGGACGAGAGAAGCTA-TCCTTCATTAAGTTCGTCTCT 119
Query 120 GTCTACGGATGACGAAACGTCAGATGAAGGTGCAAGTTCATCTACGAGAGGCTGTGGTAG 179
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 GTCTACGGATGACGAATCGTCAGATGAAGGTGCAAGTTCATCTACGAGAGACTGTGGTAG 179
Query 180 TCTTTGGAATACAATGGAATTAGTAGTCACTTTGGTTCAGATTGTTGCATCGTTAGTAGT 239
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 180 TCTTTGGAATATAATGGAATTAGTAGTCACTTTGGTTCAGATTGTTGCATCATTAATAGT 239
Query 240 TTTGACTGTGGCAAAAGATGAACATCTACAAGCACTTTTGTTAACATGGGTCATCGGTTA 299
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 TTTAACTCTGGCAAAAGATGAACATCAACAAGCACTTTTGTTAACATGGGTCATCGGTTA 299
Query 300 CACTTGTGGCTGTATTGCCAATACGCTCGTTCTTCTCCTTTCGTGTGTCCGCAAATATAA 359
|||||||||||||||| ||| ||||||| || ||||||| ||||||||||||||||| ||
Sbjct 300 CACTTGTGGCTGTATTACCATTACGCTCCTTATTCTCCTCTCGTGTGTCCGCAAATACAA 359
Query 360 CCGAATTGGGGTTTACTCAAGGACGAGAATTGATGGGGTAATGGATGCTTTGAAGATGGG 419
||||||||| |||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct 360 CCGAATTGGTGTTTACTCAAAAACGAGAACGGATAGGGTAATGGATGCTTTGAAGATGGG 419
Query 420 -AATTGAATGTTTCTTTGTTGTGTGGTTAGTTTTGGGGATAT-TATGGATTTGTTATGGA 477
||| ||||||||||||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 420 GAAT-GAATGTTTCTTTGTTGTGTGGTTAGTTATGGGGAT-TCTATGGATTTGTTATGGA 477
Query 478 CACTCATCTCCTTCTGATGCTCCTAAGCTCTACAGGTTATGT 519
||||||||| |||||||| |||||||||||||||| || |||
Sbjct 478 CACTCATCTTCTTCTGATACTCCTAAGCTCTACAGATTCTGT 519
Score = 279 bits (151), Expect = 2e-74
Identities = 183/199 (92%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 578 GGGAAGGTCTAAGAGGCGGATTTGTTTTCCAGAAACCGAGCCATGATGATTGTTGTTGCA 637
|||||||| || |||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 522 GGGAAGGTATAGGAGGTAGATTTGTTTTCAAGAAACCGAGCCATGATGATAGTTGTTGCA 581
Query 638 TATGCTTGGGGAAATATGGAGAGGAAGAGGGAGTAGCACTAAGGAAACTTGAATGCTCAC 697
|||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 582 TATGCTTGGGGAAATATGGAGAGGAAAAAGGAGTAGGACTAAGGAAACTTGAATGCTCAC 641
Query 698 ATGTATTTCATTCGGAGTGTATAGACAAATGGCTGAGAATCAAATCCTCGTGCCCTCTCT 757
| |||||||||||| | ||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 642 ACGTATTTCATTCGCAATGTATAGACAAATGGCTGAAAATCAAATCCACATGCCCTCTCT 701
Query 758 GTCAATCACAGGTTAGGTG 776
|||||||||| ||||||||
Sbjct 702 GTCAATCACAAGTTAGGTG 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5