BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg334843 Length=777 Score E Sequences producing significant alignments: (Bits) Value AT1G15590.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 710 0.0 > AT1G15590.1 | Symbols: | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G80400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:5367374-5368670 FORWARD LENGTH=880 Length=880 Score = 710 bits (384), Expect = 0.0 Identities = 477/522 (91%), Gaps = 6/522 (1%) Strand=Plus/Plus Query 1 ATGGAGAGCGAATCCGACAATGATAATGATGAGCACATTATCGAAATTACAAACGACGAC 60 ||||| ||||||||| ||| |||||||||||| ||||| ||||| ||||||||||| || Sbjct 1 ATGGACAGCGAATCCCACAGTGATAATGATGATCACATAATCGACATTACAAACGATGAA 60 Query 61 GGTTCTTTATCGGGATCGTCTTTGGACGAGAGAAGCTACT-CTTCATTAAGCTCGTCTGT 119 | ||||| ||| ||||||||||||||||||||||||| | |||||||||| |||||| | Sbjct 61 GATTCTTCATCAAGATCGTCTTTGGACGAGAGAAGCTA-TCCTTCATTAAGTTCGTCTCT 119 Query 120 GTCTACGGATGACGAAACGTCAGATGAAGGTGCAAGTTCATCTACGAGAGGCTGTGGTAG 179 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 120 GTCTACGGATGACGAATCGTCAGATGAAGGTGCAAGTTCATCTACGAGAGACTGTGGTAG 179 Query 180 TCTTTGGAATACAATGGAATTAGTAGTCACTTTGGTTCAGATTGTTGCATCGTTAGTAGT 239 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 180 TCTTTGGAATATAATGGAATTAGTAGTCACTTTGGTTCAGATTGTTGCATCATTAATAGT 239 Query 240 TTTGACTGTGGCAAAAGATGAACATCTACAAGCACTTTTGTTAACATGGGTCATCGGTTA 299 ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 240 TTTAACTCTGGCAAAAGATGAACATCAACAAGCACTTTTGTTAACATGGGTCATCGGTTA 299 Query 300 CACTTGTGGCTGTATTGCCAATACGCTCGTTCTTCTCCTTTCGTGTGTCCGCAAATATAA 359 |||||||||||||||| ||| ||||||| || ||||||| ||||||||||||||||| || Sbjct 300 CACTTGTGGCTGTATTACCATTACGCTCCTTATTCTCCTCTCGTGTGTCCGCAAATACAA 359 Query 360 CCGAATTGGGGTTTACTCAAGGACGAGAATTGATGGGGTAATGGATGCTTTGAAGATGGG 419 ||||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||||| Sbjct 360 CCGAATTGGTGTTTACTCAAAAACGAGAACGGATAGGGTAATGGATGCTTTGAAGATGGG 419 Query 420 -AATTGAATGTTTCTTTGTTGTGTGGTTAGTTTTGGGGATAT-TATGGATTTGTTATGGA 477 ||| ||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| Sbjct 420 GAAT-GAATGTTTCTTTGTTGTGTGGTTAGTTATGGGGAT-TCTATGGATTTGTTATGGA 477 Query 478 CACTCATCTCCTTCTGATGCTCCTAAGCTCTACAGGTTATGT 519 ||||||||| |||||||| |||||||||||||||| || ||| Sbjct 478 CACTCATCTTCTTCTGATACTCCTAAGCTCTACAGATTCTGT 519 Score = 279 bits (151), Expect = 2e-74 Identities = 183/199 (92%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 578 GGGAAGGTCTAAGAGGCGGATTTGTTTTCCAGAAACCGAGCCATGATGATTGTTGTTGCA 637 |||||||| || |||| ||||||||||| |||||||||||||||||||| ||||||||| Sbjct 522 GGGAAGGTATAGGAGGTAGATTTGTTTTCAAGAAACCGAGCCATGATGATAGTTGTTGCA 581 Query 638 TATGCTTGGGGAAATATGGAGAGGAAGAGGGAGTAGCACTAAGGAAACTTGAATGCTCAC 697 |||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| Sbjct 582 TATGCTTGGGGAAATATGGAGAGGAAAAAGGAGTAGGACTAAGGAAACTTGAATGCTCAC 641 Query 698 ATGTATTTCATTCGGAGTGTATAGACAAATGGCTGAGAATCAAATCCTCGTGCCCTCTCT 757 | |||||||||||| | ||||||||||||||||||| |||||||||| | |||||||||| Sbjct 642 ACGTATTTCATTCGCAATGTATAGACAAATGGCTGAAAATCAAATCCACATGCCCTCTCT 701 Query 758 GTCAATCACAGGTTAGGTG 776 |||||||||| |||||||| Sbjct 702 GTCAATCACAAGTTAGGTG 720 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37776078544 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5