BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg334870 Length=1164 Score E Sequences producing significant alignments: (Bits) Value AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfami... 797 0.0 AT1G15850.1 | Symbols: | Transducin/WD40 repeat-like superfami... 614 7e-175 > AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:30320576-30323780 REVERSE LENGTH=1439 Length=1439 Score = 797 bits (431), Expect = 0.0 Identities = 757/910 (83%), Gaps = 40/910 (4%) Strand=Plus/Plus Query 33 CAACACTAACCCTAACAACTCCTACGAGATTACTCCACCAGCC-ACCGACTCTATCTCAA 91 ||||| |||||||||||| ||||||||| |||||||| || || | || ||||| || | Sbjct 186 CAACAGTAACCCTAACAAATCCTACGAGGTTACTCCATCA-CCGGCAGATTCTATTTCGA 244 Query 92 GCTTAAGTTTTAGTCCAAGAGCCGATATACTTGTAGCAACTTCATGGGATTGTCAGGTGA 151 |||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||| Sbjct 245 GCTTAAGTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGGTGA 304 Query 152 GATGTTGGGAAATAACCCGTAGT-GACGGCTCTATAGCCAGTGAACCAAAAGTATCAATG 210 | |||||||||||| |||||||| || | |||| ||||||||| || |||| |||||| Sbjct 305 GGTGTTGGGAAATATCCCGTAGTGGA-GCCTCTCTAGCCAGTGCTCCTAAAGCATCAATA 363 Query 211 TCGCATGATAATCCGGTTTTGTGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTA-C 269 || |||||| | |||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 364 TCACATGATCAGCCGGTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGC 423 Query 270 AGGAGGATGTGATAAGCAGGCAAAGATGTGGCCATTATTGTCTGCTGCTCAACCAT-TCA 328 || |||||||||||||| ||||| |||||||| || ||||||| || |||||| | | | Sbjct 424 -GGTGGATGTGATAAGCAAGCAAAAATGTGGCCCTTGTTGTCTGGTGGTCAACC-TGTAA 481 Query 329 CTGTTGCTATGCACGATGCACCTATTTGCGAGATA-G-CTTGGATCCCTGGAATGAATCT 386 ||||||||||||| || | ||||| || || || | |||||||||| ||||||||||| Sbjct 482 CTGTTGCTATGCATGAGGGTCCTATC-GC-AGCTATGGCTTGGATCCCGGGAATGAATCT 539 Query 387 CCTTGTCA-CTGGAAGCTGGGATAAAACTTTGAAATATTGGGACGCAAGACAGGCAAC-T 444 ||||| || ||||||| ||||||||||||||||||||||||||| |||||||| ||| | Sbjct 540 CCTTG-CAACTGGAAGTTGGGATAAAACTTTGAAATATTGGGACACAAGACAG-CAAAAT 597 Query 445 CCAGCT-CATACCCAACAGCTTCCAGACAAATGTTATGCATTGACAGTGAAAGAATC-TC 502 || | | |||||||||||||||||||||||||||||| ||||| | |||||| | || || Sbjct 598 CCTG-TACATACCCAACAGCTTCCAGACAAATGTTATACATTGTCTGTGAAACA-TCCTC 655 Query 503 TGATGGTCGTTGGGACTGGGGATAGAAATTT-ACTAGTTTTCGACTTGAAAAAACCTCAG 561 ||||||| || ||||||| ||||||||| | | |||| ||| ||||| |||| |||||| Sbjct 656 TGATGGTTGTCGGGACTGCCGATAGAAATCTGA-TAGTCTTCAACTTGCAAAATCCTCAG 714 Query 562 A-TGGAGTTCAAGAGAATTGAATCGTCACTGAAGGACCAGACAAGGTGTCTTGCTGCATT 620 | || |||| |||||||| |||| |||||||| ||||||| |||||| || |||| || Sbjct 715 ACTG-AGTTTAAGAGAATCCAATCCCCACTGAAGTACCAGACGAGGTGTGTTACTGCCTT 773 Query 621 TCCTGATCAGAAAGGGTTTTTGGTTGGTTCAATTG-GGGGAAGTGTTGGTGTTCATCA-C 678 ||||||||| |||| ||||||||||||||||||| |||| | |||||||||||||| | Sbjct 774 CCCTGATCAGCAAGGTTTTTTGGTTGGTTCAATTGAGGGGCGG-GTTGGTGTTCATCATC 832 Query 679 ATTGATGATGCACAAGTGAGCAAAAACTACACTTTCAAATGCCACAGAG-TAGGCAAT-A 736 | |||||| | ||| ||||||||||| ||| |||||||||||||||| | || ||| | Sbjct 833 -TGGATGATTCTCAACAGAGCAAAAACTTCACATTCAAATGCCACAGAGAT-GGAAATGA 890 Query 737 CTATTTGCTCTGTAAATTCTCTGAATTTTCACCCGATACATGGCACGTTTATCAGCA-CT 795 ||| | ||||| || ||||||||||| |||||| |||||||||| ||| || | || Sbjct 891 -TATATATTCTGTCAACTCTCTGAATTTCCACCCGGTACATGGCACTTTTG-CAACTGCT 948 Query 796 GGCTCTGATGGTACATTCAGTTTCTGGGATAAAGATAGTAAAACAA-GACTTAAGGCCAT 854 || || |||||| | |||| ||||||||| |||||||||||| ||| |||| |||||||| Sbjct 949 GGGTCAGATGGTGCTTTCAATTTCTGGGACAAAGATAGTAAA-CAAAGACTCAAGGCCAT 1007 Query 855 GTCAAGGTGCGATCAGCCGATTACTTACAG-TACGTTCAATCACGACGGGGC-ATTATTT 912 ||| |||||| ||||||| ||| | | ||| | ||||||| ||||| || | || || | Sbjct 1008 GTCGAGGTGCAATCAGCCAATTCCATGCAGCT-CGTTCAACCACGATGGATCGAT-ATAT 1065 Query 913 GCGTATGCGG 922 || ||||||| Sbjct 1066 GCATATGCGG 1075 > AT1G15850.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:5453245-5454088 REVERSE LENGTH=423 Length=423 Score = 614 bits (332), Expect = 7e-175 Identities = 395/424 (93%), Gaps = 10/424 (2%) Strand=Plus/Plus Query 1 ATGTCTACTTCCGGTGATCAAGCCACCGCGAACAACACTAACCCTAACAACTCCTACGAG 60 |||||||||||||||||| |||||||| | | || || |||||||||||||||||||||| Sbjct 1 ATGTCTACTTCCGGTGATAAAGCCACCTCTAGCACCAATAACCCTAACAACTCCTACGAG 60 Query 61 ATTACTCCACCAGCCACCGACTCTATCTCAAGCTTAAGTTTTAGTCC-AAGAGCCGATAT 119 |||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||| Sbjct 61 ATTACTCCACCAGCCACCGACTCTATTTCGAGCTTAAGTTTTAGTCCAAAG-GCCGATAT 119 Query 120 ACTTGTAGCAACTTCATGGGATTGTCAGGTGAGATGTTGGGAAATAACCCGTAGTGACGG 179 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 ACTTGTGGCAACTTCATGGGATTGTCAGGTGAGATGTTGGGAAATAACCCGTAGTGACGG 179 Query 180 CTCTATAGCCAGTGAACCAAAAGTATCAATGTCGCATGATAATCCGGTTTTGTGTTCTGC 239 ||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||| Sbjct 180 CTCTATAGCCAGTGAACCAAAGGTATCAATGTCTCATGATCAGCCGGTTTTGTGTTCTGC 239 Query 240 TTGGAAAGATGATGGAACCACAGTCTTTACAGGAGGATGTGATAAGCAGGCAAAGATGTG 299 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 240 TTGGAAAGATGATGGAACCACAGTCTTTACCGGAGGATGTGATAAGCAGGCAAAAATGTG 299 Query 300 GCCATTATTGTCTGCTGCTCAACCAT-TCACTGTTGCTATGCACGATGCACCTATT---T 355 |||||| ||||||| ||||||||||| | |||||||||||||||||||| ||| || | Sbjct 300 GCCATTGTTGTCTGGTGCTCAACCATCT-ACTGTTGCTATGCACGATGCTCCT-TTCAAT 357 Query 356 GCGAGATAGCTTGGATCCCTGGAATGAATCTCCTTGTCACTGGAAGCTGGGATAAAACTT 415 | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 358 -C-AGATAGCTTGGATCCCTGGAATGAATCTCCTTGTTACTGGAAGCTGGGATAAAACTT 415 Query 416 TGAA 419 |||| Sbjct 416 TGAA 419 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57128220210 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5