BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334870
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfami... 797 0.0
AT1G15850.1 | Symbols: | Transducin/WD40 repeat-like superfami... 614 7e-175
> AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:30320576-30323780 REVERSE LENGTH=1439
Length=1439
Score = 797 bits (431), Expect = 0.0
Identities = 757/910 (83%), Gaps = 40/910 (4%)
Strand=Plus/Plus
Query 33 CAACACTAACCCTAACAACTCCTACGAGATTACTCCACCAGCC-ACCGACTCTATCTCAA 91
||||| |||||||||||| ||||||||| |||||||| || || | || ||||| || |
Sbjct 186 CAACAGTAACCCTAACAAATCCTACGAGGTTACTCCATCA-CCGGCAGATTCTATTTCGA 244
Query 92 GCTTAAGTTTTAGTCCAAGAGCCGATATACTTGTAGCAACTTCATGGGATTGTCAGGTGA 151
|||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||
Sbjct 245 GCTTAAGTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGGTGA 304
Query 152 GATGTTGGGAAATAACCCGTAGT-GACGGCTCTATAGCCAGTGAACCAAAAGTATCAATG 210
| |||||||||||| |||||||| || | |||| ||||||||| || |||| ||||||
Sbjct 305 GGTGTTGGGAAATATCCCGTAGTGGA-GCCTCTCTAGCCAGTGCTCCTAAAGCATCAATA 363
Query 211 TCGCATGATAATCCGGTTTTGTGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTA-C 269
|| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 364 TCACATGATCAGCCGGTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGC 423
Query 270 AGGAGGATGTGATAAGCAGGCAAAGATGTGGCCATTATTGTCTGCTGCTCAACCAT-TCA 328
|| |||||||||||||| ||||| |||||||| || ||||||| || |||||| | | |
Sbjct 424 -GGTGGATGTGATAAGCAAGCAAAAATGTGGCCCTTGTTGTCTGGTGGTCAACC-TGTAA 481
Query 329 CTGTTGCTATGCACGATGCACCTATTTGCGAGATA-G-CTTGGATCCCTGGAATGAATCT 386
||||||||||||| || | ||||| || || || | |||||||||| |||||||||||
Sbjct 482 CTGTTGCTATGCATGAGGGTCCTATC-GC-AGCTATGGCTTGGATCCCGGGAATGAATCT 539
Query 387 CCTTGTCA-CTGGAAGCTGGGATAAAACTTTGAAATATTGGGACGCAAGACAGGCAAC-T 444
||||| || ||||||| ||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 540 CCTTG-CAACTGGAAGTTGGGATAAAACTTTGAAATATTGGGACACAAGACAG-CAAAAT 597
Query 445 CCAGCT-CATACCCAACAGCTTCCAGACAAATGTTATGCATTGACAGTGAAAGAATC-TC 502
|| | | |||||||||||||||||||||||||||||| ||||| | |||||| | || ||
Sbjct 598 CCTG-TACATACCCAACAGCTTCCAGACAAATGTTATACATTGTCTGTGAAACA-TCCTC 655
Query 503 TGATGGTCGTTGGGACTGGGGATAGAAATTT-ACTAGTTTTCGACTTGAAAAAACCTCAG 561
||||||| || ||||||| ||||||||| | | |||| ||| ||||| |||| ||||||
Sbjct 656 TGATGGTTGTCGGGACTGCCGATAGAAATCTGA-TAGTCTTCAACTTGCAAAATCCTCAG 714
Query 562 A-TGGAGTTCAAGAGAATTGAATCGTCACTGAAGGACCAGACAAGGTGTCTTGCTGCATT 620
| || |||| |||||||| |||| |||||||| ||||||| |||||| || |||| ||
Sbjct 715 ACTG-AGTTTAAGAGAATCCAATCCCCACTGAAGTACCAGACGAGGTGTGTTACTGCCTT 773
Query 621 TCCTGATCAGAAAGGGTTTTTGGTTGGTTCAATTG-GGGGAAGTGTTGGTGTTCATCA-C 678
||||||||| |||| ||||||||||||||||||| |||| | |||||||||||||| |
Sbjct 774 CCCTGATCAGCAAGGTTTTTTGGTTGGTTCAATTGAGGGGCGG-GTTGGTGTTCATCATC 832
Query 679 ATTGATGATGCACAAGTGAGCAAAAACTACACTTTCAAATGCCACAGAG-TAGGCAAT-A 736
| |||||| | ||| ||||||||||| ||| |||||||||||||||| | || ||| |
Sbjct 833 -TGGATGATTCTCAACAGAGCAAAAACTTCACATTCAAATGCCACAGAGAT-GGAAATGA 890
Query 737 CTATTTGCTCTGTAAATTCTCTGAATTTTCACCCGATACATGGCACGTTTATCAGCA-CT 795
||| | ||||| || ||||||||||| |||||| |||||||||| ||| || | ||
Sbjct 891 -TATATATTCTGTCAACTCTCTGAATTTCCACCCGGTACATGGCACTTTTG-CAACTGCT 948
Query 796 GGCTCTGATGGTACATTCAGTTTCTGGGATAAAGATAGTAAAACAA-GACTTAAGGCCAT 854
|| || |||||| | |||| ||||||||| |||||||||||| ||| |||| ||||||||
Sbjct 949 GGGTCAGATGGTGCTTTCAATTTCTGGGACAAAGATAGTAAA-CAAAGACTCAAGGCCAT 1007
Query 855 GTCAAGGTGCGATCAGCCGATTACTTACAG-TACGTTCAATCACGACGGGGC-ATTATTT 912
||| |||||| ||||||| ||| | | ||| | ||||||| ||||| || | || || |
Sbjct 1008 GTCGAGGTGCAATCAGCCAATTCCATGCAGCT-CGTTCAACCACGATGGATCGAT-ATAT 1065
Query 913 GCGTATGCGG 922
|| |||||||
Sbjct 1066 GCATATGCGG 1075
> AT1G15850.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:5453245-5454088 REVERSE LENGTH=423
Length=423
Score = 614 bits (332), Expect = 7e-175
Identities = 395/424 (93%), Gaps = 10/424 (2%)
Strand=Plus/Plus
Query 1 ATGTCTACTTCCGGTGATCAAGCCACCGCGAACAACACTAACCCTAACAACTCCTACGAG 60
|||||||||||||||||| |||||||| | | || || ||||||||||||||||||||||
Sbjct 1 ATGTCTACTTCCGGTGATAAAGCCACCTCTAGCACCAATAACCCTAACAACTCCTACGAG 60
Query 61 ATTACTCCACCAGCCACCGACTCTATCTCAAGCTTAAGTTTTAGTCC-AAGAGCCGATAT 119
|||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||
Sbjct 61 ATTACTCCACCAGCCACCGACTCTATTTCGAGCTTAAGTTTTAGTCCAAAG-GCCGATAT 119
Query 120 ACTTGTAGCAACTTCATGGGATTGTCAGGTGAGATGTTGGGAAATAACCCGTAGTGACGG 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACTTGTGGCAACTTCATGGGATTGTCAGGTGAGATGTTGGGAAATAACCCGTAGTGACGG 179
Query 180 CTCTATAGCCAGTGAACCAAAAGTATCAATGTCGCATGATAATCCGGTTTTGTGTTCTGC 239
||||||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||
Sbjct 180 CTCTATAGCCAGTGAACCAAAGGTATCAATGTCTCATGATCAGCCGGTTTTGTGTTCTGC 239
Query 240 TTGGAAAGATGATGGAACCACAGTCTTTACAGGAGGATGTGATAAGCAGGCAAAGATGTG 299
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 240 TTGGAAAGATGATGGAACCACAGTCTTTACCGGAGGATGTGATAAGCAGGCAAAAATGTG 299
Query 300 GCCATTATTGTCTGCTGCTCAACCAT-TCACTGTTGCTATGCACGATGCACCTATT---T 355
|||||| ||||||| ||||||||||| | |||||||||||||||||||| ||| || |
Sbjct 300 GCCATTGTTGTCTGGTGCTCAACCATCT-ACTGTTGCTATGCACGATGCTCCT-TTCAAT 357
Query 356 GCGAGATAGCTTGGATCCCTGGAATGAATCTCCTTGTCACTGGAAGCTGGGATAAAACTT 415
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 358 -C-AGATAGCTTGGATCCCTGGAATGAATCTCCTTGTTACTGGAAGCTGGGATAAAACTT 415
Query 416 TGAA 419
||||
Sbjct 416 TGAA 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5