BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg334901
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16220.1 | Symbols: | Protein phosphatase 2C family protein... 2200 0.0
AT1G79630.1 | Symbols: | Protein phosphatase 2C family protein... 671 0.0
> AT1G16220.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:5548653-5550553 FORWARD LENGTH=1476
Length=1476
Score = 2200 bits (1191), Expect = 0.0
Identities = 1389/1484 (94%), Gaps = 16/1484 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCTGTGTCATTCGAGAATTGATAAGACCACCAGGAAGGTAACCGGAGCAACAAGC 60
|||||| |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 1 ATGGGTTTGTGTCATTCGAAAATTGATAAGACCACGAGGAAGGAAACCGGAGCTACAAGC 60
Query 61 ACCGCCACTACTACTATGGTGGAGAGACAGAGCTCCGGGAGGCTGCCGAGGCCTAGAGAT 120
|||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ACCGCCACTACTAC--T-GTAGAGAGACAGAGCTCCGGGAGGCTGCGGAGGCCTAGAGAC 117
Query 121 TTATACAGCGGCGGCGAAATCAATGAGATTCAACAAGTCGTGGGTCGGCTTGTTGGCAAT 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 118 TTATACAGCGGCGGCGAAATCAGTGAGATTCAACAAGTCGTGGGTCGGCTTGTTGGCAAT 177
Query 181 GGTTCTAGTGAAATTGCATGCCTTTACACACAACAAGGCAAAAAAGGAACTAACCAAGAC 240
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGTTCTAGTGAAATTGCTTGTCTTTACACACAACAAGGCAAAAAAGGAACTAACCAAGAC 237
Query 241 GCCATGCTTGTCTGGGAGAATTTTTGTTCAAGAAGCGATACAGTGTTATGTGGTGTATTC 300
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 238 GCCATGCTTGTCTGGGAGAATTTCTGTTCGAGAAGCGATACAGTGTTATGTGGTGTATTT 297
Query 301 GATGGACATGGTCCATTTGGTCATATGGTTTCAAAGAGAGTCCGAGATATGTTACCTTTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GATGGACATGGTCCATTTGGTCATATGGTTTCAAAGAGAGTCCGAGATATGTTACCTTTC 357
Query 361 ATATTATCAACTCAATTGAAAACGACCTTAAGGAA-GGAACAAAGCGGCTCCAAGAATGG 419
| ||||||||||||| ||||||||||| | ||||| ||||||||| |||||||||||||
Sbjct 358 ACATTATCAACTCAACTGAAAACGACC-TCAGGAACAGAACAAAGCAGCTCCAAGAATGG 416
Query 420 CCTTGAGTCT--G-CTACTTGTGTAGATGAAGAGCAGTGGTTTGAGTTACAGCCGA-ACG 475
||| | ||| | |||||||||||||||||||||| |||| |||||||||| | | |
Sbjct 417 CCTCAACTCTGCGCCTACTTGTGTAGATGAAGAGCAATGGTGTGAGTTACAG-CTATGTG 475
Query 476 AGAAGGACGAAAAGCTACTT-CCGGAGATGTATCTCCCGT-TGAAGCGGGCTTTGCTCAA 533
||||||||||||||||| || || |||||||||||||| | | || |||||||||||||
Sbjct 476 AGAAGGACGAAAAGCTA-TTCCCCGAGATGTATCTCCC-TCTTAAAAGGGCTTTGCTCAA 533
Query 534 GACTTGTCAACAGATGGAT-AGAGAGTTAAAAATGCATCCAACCATCAATTGTTTCTGCA 592
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 534 GACTTGTCAACAGATGGATAAG-GAGTTAAAAATGCATCCAACCATCAATTGTTTCTGCA 592
Query 593 GCGGAACTACTTCTGTCACTGTGATCAAACAGGGTAAAGATCTGGTGGTGGGAAATATTG 652
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 593 GCGGAACAACTTCTGTCACTGTAATCAAACAGGGTAAGGATCTGGTGGTGGGAAATATTG 652
Query 653 GTGACTCGAGAGCTGTTCTTGCCACAAGAGACCAAGACAATGCTTTGGTCGCTGTACCAT 712
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 653 GTGACTCGAGAGCCGTTCTAGCCACAAGAGACCAAGACAATGCTTTGGTGGCTGTACAAT 712
Query 713 TGACCATAGACTTAAAACCCGATTTGCCAAGTGAATCAGCAAGAATCCATAAATGTAAAG 772
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 713 TGACCATAGACTTAAAACCTGATTTGCCAAGTGAATCAGCAAGAATCCATAGATGTAAAG 772
Query 773 GTAGAGTGTTTGCCTTACAAGACGAGCCTGAGGTTGCGCGTGTGTGGTTACCGAACAGCG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GTAGAGTGTTTGCCTTACAAGACGAGCCTGAGGTTGCGCGTGTGTGGTTACCGAACAGCG 832
Query 833 ATTCACCTGGTTTAGCAATGGCTCGAGCTTTTGGGGACTTCTGTCTTAAAGATTACGGGC 892
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 833 ATTCACCTGGTTTAGCAATGGCTCGAGCTTTTGGGGACTTCTGCCTTAAAGATTATGGTC 892
Query 893 TAATCTCTGTTCCGGATATCAACTACCATCGCCTCACTGAAAGAGATCAGTTTATTATTC 952
|||||||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 893 TAATCTCTGTCCCGGATATCAACTACCATAGACTCACTGAAAGAGATCAGTATATTATTC 952
Query 953 TAGCCACAGATGGGGTATGGGATGTTTTGTCGAATAAAGAAGCTGTTGATATTGTGGCTT 1012
|||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 953 TAGCTACTGACGGGGTATGGGATGTTTTGTCGAACAAAGAAGCTGTTGATATTGTGGCTT 1012
Query 1013 CAGCTCCTAGTCGAAACACTGCAGCTCGTGCTGTAGTCGACACAGCAGTTCGAGCATGGA 1072
|||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||
Sbjct 1013 CAGCTCCTAGTCGAGATACTGCAGCTCGTGCTGTAGTCGACACGGCGGTTCGAGCATGGA 1072
Query 1073 GGCTCAAGTATCCTACTTCCAAGAACGACGATTGTGCTGTTGTATGTCTCTTTCTTGAAG 1132
|||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1073 GGCTTAAGTATCCTACTTCCAAGAATGATGATTGTGCTGTAGTATGTCTCTTTCTTGAAG 1132
Query 1133 ACACTTCAGCAGCAGCATCCGTGGAAGTTTCAGAAACGGTTAATCATTCACATAAAGAGT 1192
|||||||||||| || | ||||||||||||| ||||| ||||||||||| ||| ||||||
Sbjct 1133 ACACTTCAGCAGGAGGAACCGTGGAAGTTTCGGAAACCGTTAATCATTCTCATGAAGAGT 1192
Query 1193 CTACAGAGAGTGTCACTATCACATTAAGCAAAGATTCTGACAAGAAGGAAGAGGCTTCAA 1252
|||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct 1193 CTACAGAGAGTGTCACCATAACATCAAGCAAAGATGCCGACAAGAAGGAAGAGGCTTCAA 1252
Query 1253 CAGAAACAAATGAGATTGTACCGGTTTGGGAGATAAAAGAAGAAAAGAAGCTTGAGAGTT 1312
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1253 CAGAAACAAATGAGACTGTACCGGTTTGGGAGATAAAAGAAGAAAAGACGCCTGAGAGTT 1312
Query 1313 GCAGGATTGAGTCCAAGAAGACAACACTCGCCGAGTGTATATCGGTTAAGGATGAAGAAG 1372
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 1313 GCAGGATTGAGTCCAAGAAGACAACACTCGCAGAGTGTATATCGGTGAAGGATGATGAAG 1372
Query 1373 AGTGGTCGGCATTGGAAGGATTGACTAGAGTCAACAGTCTCTTGAGCATTCCTAGGTTCT 1432
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 AGTGGTCGGCGTTGGAAGGATTGACTAGAGTCAACAGTCTCTTGAGCATTCCTAGGTTCT 1432
Query 1433 TCTCCGGCGAGCTAAGATCAAGTAGCTGGAGAAAATGGTTGTGA 1476
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TCTCTGGCGAGCTAAGATCAAGTAGCTGGAGAAAATGGTTGTGA 1476
> AT1G79630.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:29962730-29965460 REVERSE LENGTH=2007
Length=2007
Score = 671 bits (363), Expect = 0.0
Identities = 578/683 (85%), Gaps = 9/683 (1%)
Strand=Plus/Plus
Query 448 GAGCAGTGGTTTGAGTTACAGCCGAACGAGAAGGACGAAAAGCTACTTCCGGAGATGTAT 507
||||| |||| ||||||| | || || | ||| ||| | | ||||||||||||||||
Sbjct 811 GAGCAATGGTGTGAGTTAAATCCAAATGTGAACAACG--ATG-AACTTCCGGAGATGTAT 867
Query 508 CT-CC-CGTTGAAGCGGGCTTTGCTCAAGACTTGTCAACAGATGGATAGAGAGTTAAAAA 565
|| || | || || | || |||||||| ||||||| ||||| |||| |||| | ||||
Sbjct 868 CTGCCTC-TT-AAACATGCGATGCTCAAGTCTTGTCAGCAGATAGATAAAGAGCTGAAAA 925
Query 566 TGCATCCAACCATCAATTGTTTCTGCAGCGGAACTACTTCTGTCACTGTGATCAAACAGG 625
|||||||||| || |||| |||||||||||||| ||||| |||||| ||||||| ||||
Sbjct 926 TGCATCCAACTATTGATTGCTTCTGCAGCGGAACAACTTCAGTCACTTTGATCAAGCAGG 985
Query 626 GTAAAGATCTGGTGGTGGGAAATATTGGTGACTCGAGAGCTGTTCTTGCCACAAGAGACC 685
|| | ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 986 GTGAGGATTTGGTGGTTGGAAATATTGGTGACTCGAGAGCCGTTCTTGCCACAAGAGACG 1045
Query 686 AAGACAATGCTTTGGTCGCTGTACCATTGACCATAGACTTAAAACCCGATTTGCCAAGTG 745
|||||||||||||| ||||||||| ||| || |||||||||||||| ||||||||| |||
Sbjct 1046 AAGACAATGCTTTGCTCGCTGTACAATTAACTATAGACTTAAAACCGGATTTGCCAGGTG 1105
Query 746 AATCAGCAAGAATCCATAAATGTAAAGGTAGAGTGTTTGCCTTACAAGACGAGCCTGAGG 805
||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||||||||||
Sbjct 1106 AATCAGCGAGAATCCAGAAATGTAAAGGAAGAGTCTTTGCATTGCAAGACGAGCCTGAGG 1165
Query 806 TTGCGCGTGTGTGGTTACCGAACAGCGATTCACCTGGTTTAGCAATGGCTCGAGCTTTTG 865
| || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1166 TAGCTCGTGTATGGTTACCAAACAGTGATTCACCTGGTTTAGCAATGGCTCGAGCTTTTG 1225
Query 866 GGGACTTCTGTCTTAAAGATTACGGGCTAATCTCTGTTCCGGATATCAACTACCATCGCC 925
| ||||| ||||| ||||||||||| ||||||||||||| ||||||||||| | ||||
Sbjct 1226 GAGACTTTTGTCTCAAAGATTACGGATTAATCTCTGTTCCAGATATCAACTATCGCCGCC 1285
Query 926 TCACTGAAAGAGATCAGTTTATTATTCTAGCCA-CAGATGGGGTATGGGATGTTTTGTCG 984
| || ||| |||| || || |||||||| || | | || |||||||||||||| ||||||
Sbjct 1286 TAACGGAACGAGACCAATTCATTATTCTTGCTAGC-GACGGGGTATGGGATGTGTTGTCG 1344
Query 985 AATAAAGAAGCTGTTGATATTGTGGCTTCAGCTCCTAGTCGAAACACTGCAGCTCGTGCT 1044
|| ||||||||||||||||| || || |||||||||||| ||| ||| || ||||| |||
Sbjct 1345 AACAAAGAAGCTGTTGATATCGTTGCCTCAGCTCCTAGTAGAAGCACAGCGGCTCGAGCT 1404
Query 1045 GTAGTCGACACAGCAGTTCGAGCATGGAGGCTCAAGTATCCTACTTCCAAGAACGACGAT 1104
|||| |||||||| || ||| ||||||| ||||||| || |||||||||||||| ||
Sbjct 1405 CTAGTGGACACAGCGGTACGATCATGGAGAATCAAGTACCCAACTTCCAAGAACGATGAC 1464
Query 1105 TGTGCTGTTGTATGTCTCTTTCT 1127
||| | || || |||||||||||
Sbjct 1465 TGTACAGTAGTCTGTCTCTTTCT 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5